Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi300g00043 ATGGACCCATGGCTCGACGATCTCGCCGACGACCTCCAAAGCCTAAGCTTCGCCTCCACAACTACCACCACCGCCACCGCTGACATCAAACGCAGCACTAGCTTCGGCTCCGAAACCACCGCATCCTTAACCGCCTCCACCTCCGCCCGCCTCCCTCTCACCAAACCTCACGCGCCTTCCTCCGACCCTCGCTGGGCCGCCATCCACCGGATCCGATCAGAGTCCCCCAGCCGCCGCATCGTCCCCTCCGACCTCCGCTTCTCCCGCCGCCTCGGCTCCGGCGACATTAGCTCCGTCTACCTCGCCGAACTCAACGACGGAACCCTCCCTGTCATGTTCGCCGCTAAGGTCATGGACAAGAAAGAGCTCGTGAGTCGAAGCAAGGAAGGGAGAGCCAAAACTGAAAGAGAAATCCTCGAATTGCTTGACCACCCTTTTTTGCCTACTCTCTACGCCACCATCGATGCCACGAAATGGCTCTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCATGTTCTCCGGCAACGCCAGCCAAACAAACGCTTCATCGAACCCGCCGTCAGGATGGGATCGGGTGTGGGCGAGCCTAGGGGATCCGTTGGTGGAAATCTTGAACTTAAACTAGAACCGTTATCATTCTACGCATCAGAGGTGTTGGTTGCACTTGAATACCTTCACATGTTGGGGATAGTGTACCGTGATCTCAAGCCTGAGAACGTGCTAGTTCGATCAGACGGCCACATCATGCTCACTGACTTTGACCTGTCGTTAAAATGTGATGATTCCTCCACACCAACGGCCCAGATCATCTCTGAGCAAAACTCTCCTCACATAGGCCCACACAAGGATCCCCACGTTGAGCCCTCTCAATTCACCTCGTCTTCTTGCATAATACCCAATTGTATAGTCCCTGCAGTGTCGTGTTTCCACCCAAAACGCAAGCGGAAGAAGAAGCAAAGCCAGCGTAGTGGGCCTGAGTTTGTAGCTGAGCCCATGGATGTCCGGTCCATGTCATTTGTTGGGACCCACGAATACTTGGCTCCGGAGATCGTGTCTGGGGAGGGACACGGTAGTGCCGTGGACTGGTGGACCTTAGGAATATTTATATTTGAATTATTTTATGGTGTGACACCCTTTAGGGGCATGGACAATGAGCTAACACTAGCAAACATTGTGGCTCGAGCCTTGGAGTTCCCAAAGGAACCCACCGTGCCAGCCACGGCAAAGGATCTTATCTCACAGTTATTGGTTAAGGACCCGACAAGGAGGCTAGGGTCAACAATGGGGGCTTCCGCGATCAAACACCACCCGTTTTTTCAAGGTGTGAATTGGGCTTTGTTAAGGTGTACACCTCCACCCTATGTGCCCCCACCTTACACTAAAGAAGCTGTATCTGATGAAACTTGTCCACAGACTCCTGTTGATTATTATTGA 1440 0.5396 MDPWLDDLADDLQSLSFASTTTTTATADIKRSTSFGSETTASLTASTSARLPLTKPHAPSSDPRWAAIHRIRSESPSRRIVPSDLRFSRRLGSGDISSVYLAELNDGTLPVMFAAKVMDKKELVSRSKEGRAKTEREILELLDHPFLPTLYATIDATKWLCLLTEFCPGGDLHVLRQRQPNKRFIEPAVRMGSGVGEPRGSVGGNLELKLEPLSFYASEVLVALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSSTPTAQIISEQNSPHIGPHKDPHVEPSQFTSSSCIIPNCIVPAVSCFHPKRKRKKKQSQRSGPEFVAEPMDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGMDNELTLANIVARALEFPKEPTVPATAKDLISQLLVKDPTRRLGSTMGASAIKHHPFFQGVNWALLRCTPPPYVPPPYTKEAVSDETCPQTPVDYY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi300g00043 479 FunFam Serine/threonine-protein kinase OXI1 206 263 - -
Sebi300g00043 479 FunFam serine/threonine-protein kinase D6PK-like 336 459 - -
Sebi300g00043 479 Pfam Protein kinase domain 88 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi300g00043 479 Pfam Protein kinase domain 338 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi300g00043 479 Gene3D Transferase(Phosphotransferase) domain 1 210 263 - -
Sebi300g00043 479 FunFam serine/threonine-protein kinase D6PKL2 84 170 - -
Sebi300g00043 479 ProSiteProfiles Protein kinase domain profile. 85 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi300g00043 479 MobiDBLite consensus disorder prediction 36 54 - -
Sebi300g00043 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Sebi300g00043 479 MobiDBLite consensus disorder prediction 36 62 - -
Sebi300g00043 479 PANTHER FLIPPASE KINASE 1-RELATED 30 463 - -
Sebi300g00043 479 Gene3D Phosphorylase Kinase; domain 1 77 197 - -
Sebi300g00043 479 SUPERFAMILY Protein kinase-like (PK-like) 67 468 IPR011009 -
Sebi300g00043 479 SMART serkin_6 85 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi300g00043 479 Gene3D Transferase(Phosphotransferase) domain 1 335 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi300g00043 Sebi-Chr300 754253 758399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi300g00043 1 479 AGC Kinase Gene Family AT3G44610 63.415 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi300g00043 Pkinase 1.5e-27 CL0016