Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi300g00011 ATGATGATCGTTGATGGGTATGGCGGGAAGGCAAAGCAATTGGTCACGTGCTTATCACGCGGATTCCCGCCATGTTACGGAGAGACTAATTTCGTCCCCGCCTCTTTCGGTTTCGATGGGGAGCAAGGTCACCGACCACCACCTCTCCACCGTCCGATCCATTGTCGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTTCACATGGCCAAAACGACGTCACTGCAGCCATCAACATCATCTTCGACAGTACACACACCCCCAAATTCAAACCCCCCCGCACCAACAACAACCCGCCACCACGAGTTTCTCCTCCAAAAAAATTGACCCCTCCCACCGTTACTGCCAGCTCCAAGGCCAATGCCGATGGAGGAGACAGCAATGACTGCTCTGTCGGGTCCGATGATTGGTGGTTCGTGGGTTCTAGCGAAGTGTCAGGGTTGTCCACTTGTAAAGGGAGGACTATAAATTCCGGTGATGCAGTGCTTTTCAAGTTCCCCACAAAGAAACACTCTGCCTCTCCCTCTCCTGGTAAAGGGTTCGGAAGAGTAGCAACATGTTCAGAGATAGTTCGATTCTCCACTGAACAAGATGGAGAGAATACCAACGAATGGGCTCGGTGTCTCTTGCCTCTTGTGCGGGGTAATAAGGTTAGAGTTGAGGGGCACTGTAAATTTGCGCCTAATGTTTTGGGCATCATGGACACCATTGTCTTGTCAGTCAGTGTCTTTATCAATAGGTCAATGTTTGTTAAGCATCACCAGGTTTCTCTCAAAGATGCTACCAATTCCACGGATGAATCAGTGTTCCATCCCCTTCCAACCCTGTTTCGGTTGCTAGGGCTGAGCCCTTTTAAGAAGGCAGAGTTGACTCCTGGTGACTTCTATTCCAACAAGCGTCCTTTCAGCCAAAGGGATTCCATTTCTGAAATTGATGTTGACAACATTGTTGGTGTCGGATCAAGCTTAGAGTTAGAGGAAATGGATCCACCTGGGAATCTTCTGTGTGAACTGCGGCCCTATCAAAAACAGGCTCTTTATTGGATGATCCAGATGGAGAAGGGACGAACTATGGATGAGACAGCAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAATGCTATGGGGCTTGGAAAGACCATTATGACCATATCCCTTCTTCTTGCCCATTCAGGGGGGGTGGATCACTAGGCAGTCAACCCATAACTCAGTCCTTTATTGAAGGTGGTGAAGTTAGTGACACTGATATGGTGCACAGTGTTTCAAACATACCAAAGAAGGCAGCCAAATTTACTGGTTTTGACAAACTGATAAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGCGCACCCTGGGTCCCTGTCTGTATATGTTCATTATGGACAAAGTAGGCCCAAAGATGCAAAATATCTAGCTCAAAATGATGTTGTGATTACTACATTCGGAATTTTGACCTCAGAATTTACCAGTGAGAATGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAATTTCTATGGCAGCTGCTGCTCTAACTGCTGACAGACGTTGGTGTCTTACTGGGACTCCTATCCAGAACAGCCTTGAGGATGTTTACAGTCTTCTTCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGAGTGGTGATGAGAGAGGATTGAAGTTAGTTCAGTCCATTTTGAAACCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTCCCTCCAGCTGAGATGCAGATAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTTTATGAAGCCCTATTCAAAAGATCTAAGGTAAAGTTCGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTACGCTTCAATACTAGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTGATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAATTAGCTAAGCGCTTCCTTAAAGGAACCTATAATGCTTCAGAAGGTGAAGTAAAAGATGCACTCTCACGGGCTTATGTCCAAGAAGTGGTTGAAGAGCTACGTAAAGGGGAGCAGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATTCTACTTCTGGTTTATGTCCTGTTTGTAGGAAAATAATCAGCAAGCAGGATCTTATCACTGCCCCTACTGAGAGTCGGTTTCAAATTGATATTGATAAGAACTGGGTAGAGTCATGCAAGATAACTGTTCTTTTGAATGAACTTGAAAAACTTCGCTCATCAGGCTCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACTTTGAGTCAGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACACCCTGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTCGGTATAAACCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAAGAACAAGCTGTTATGCGTATTCATCGCATTGGTCAAACAAAGAAGGTGGCCATCAAACGATTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACCGATCAAGAAGTTCGAACTGCACGGATTGAAGAGTTGAAGATGCTTTTTACTTAG 2976 0.4543 MMIVDGYGGKAKQLVTCLSRGFPPCYGETNFVPASFGFDGEQGHRPPPLHRPIHCRFRIHRHGHHQSPSHGQNDVTAAINIIFDSTHTPKFKPPRTNNNPPPRVSPPKKLTPPTVTASSKANADGGDSNDCSVGSDDWWFVGSSEVSGLSTCKGRTINSGDAVLFKFPTKKHSASPSPGKGFGRVATCSEIVRFSTEQDGENTNEWARCLLPLVRGNKVRVEGHCKFAPNVLGIMDTIVLSVSVFINRSMFVKHHQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFYSNKRPFSQRDSISEIDVDNIVGVGSSLELEEMDPPGNLLCELRPYQKQALYWMIQMEKGRTMDETATTLHPCWEAYRLADKCYGAWKDHYDHIPSSCPFRGGGSLGSQPITQSFIEGGEVSDTDMVHSVSNIPKKAAKFTGFDKLIKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSVYVHYGQSRPKDAKYLAQNDVVITTFGILTSEFTSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALTADRRWCLTGTPIQNSLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFESGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPAEMQIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLKGTYNASEGEVKDALSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKIISKQDLITAPTESRFQIDIDKNWVESCKITVLLNELEKLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLSQQQREKVIKQFSEDSDTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi300g00011 991 ProSiteProfiles Zinc finger RING-type profile. 756 796 IPR001841 -
Sebi300g00011 991 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 134 991 - -
Sebi300g00011 991 Gene3D - 638 991 IPR027417 -
Sebi300g00011 991 Pfam Helicase conserved C-terminal domain 826 938 IPR001650 -
Sebi300g00011 991 SMART helicmild6 855 938 IPR001650 -
Sebi300g00011 991 Pfam HIRAN domain 141 242 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sebi300g00011 991 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 826 991 IPR001650 -
Sebi300g00011 991 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 816 IPR013083 -
Sebi300g00011 991 Pfam SNF2-related domain 342 700 IPR000330 GO:0005524|GO:0140658
Sebi300g00011 991 SUPERFAMILY RING/U-box 743 802 - -
Sebi300g00011 991 Coils Coil 991 991 - -
Sebi300g00011 991 SMART ring_2 756 795 IPR001841 -
Sebi300g00011 991 CDD DEXDc_SHPRH-like 339 622 - -
Sebi300g00011 991 MobiDBLite consensus disorder prediction 86 129 - -
Sebi300g00011 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 980 IPR027417 -
Sebi300g00011 991 ProSitePatterns Zinc finger RING-type signature. 771 780 IPR017907 -
Sebi300g00011 991 SMART HIRAN_2 141 246 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sebi300g00011 991 Gene3D - 433 623 IPR038718 -
Sebi300g00011 991 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 442 584 IPR014001 -
Sebi300g00011 991 Pfam Zinc finger, C3HC4 type (RING finger) 753 801 - -
Sebi300g00011 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 622 IPR027417 -
Sebi300g00011 991 CDD SF2_C_SNF 822 949 - -
Sebi300g00011 991 SMART ultradead3 335 601 IPR014001 -
Sebi300g00011 991 MobiDBLite consensus disorder prediction 111 129 - -
Sebi300g00011 991 MobiDBLite consensus disorder prediction 94 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi300g00011 Sebi-Chr300 146268 156498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi300g00011 71 991 RAD5 or RAD16-like Gene Family AT5G22750 67.033 0.0 1309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi300g00011 SNF2_N 1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi300g00011 K15505 - gmx:100794558 1516.52