Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00202 ATGGGTTATCTGAGCAAAGCCTCCAAGAGCCTGAGGCAATCAAGTTGTGTATCGTTGTTGCGCAATTTCACCCCATTATTCAGCAGAATTACCCATCAAAGCTTGTCCGTAACCCCTGCACTGTTCTGTTCACAGTCACGCCAAAACAGCACCAAAGAGAAAAGCACCATAGATTTGACTCAGTACCCTCCAGAGCTCGTCAGAAACTTCTCAATCATTGCACATGTGGATCATGGCAAGTCCACCCTTGCTGATCGCCTTCTCGAACTCACGGGAACCATTAAAAAAGGCCATGGACAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGAATCACGGTTAAAGCCCAGACAGCAACAATGTTCTATAAGTATAACGTAAATGGTGCTGATTGTAGTGATGTAAAGGAGTCACCTAATTATTTGCTGAATCTCATTGACACTCCTGGGCATGTGGATTTTAGTTATGAAGTGTCAAGGTCACTTGCAGCTTGTCAGGGTGTGCTTTTGGTTGTTGATGCTGCTCAAGGAGTCCAAGCACAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTAACAATTGTACCTGTCATAAACAAGATTGACCAGCCAACTGCTGATCCTGACCGTGTTAAAGCCCAATTGAAAACAATGTTTGATCTTGACCCAAGTGATGCACTGCTAACATCTGCTAAAACTGGGAAGGGTCTTGAGCAAGTCCTTCCGGCAGTCATACAGCGCATACCTCCACCTCCTGGGAGGAGTGGAGCTCCACTACGCATGCTTTTACTTGATTCGTATTATGATGAATACAAAGGAGTAATATGCCATGTTGCTGTTATTGATGGTGCCCTGCGTAAGGGGGATAAAATTTCTTCTGCTGCTACTGGTCAGTCATATGAAGCTTTGGATATAGGCATCATGCATCCTGAACTTACACCTACTGGAATCTTGCTTACTGGGCAAGTTGGTTATGTTGTAAGTGGCATGAGGTCAACCAAAGAGGCACGCGTTGGAGATACAATTTACCATACACGAAGCTCCGTAGAGCCTCTTCCAGGCTTCAAACCAGCAAAACATATGGTATTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCACTCAACCATGCAGTAGAGAGGCTAACATGCAATGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACTGCTCTAGGTCTGGGGTTCAGGTGTGGTTTTCTAGGCCTTCTACACATGGATGTTTTTCATCAAAGGCTTGAACAGGAGTATGGAGCTCATGTTATCTCAACTGTTCCTACTGTGCCTTATATATTTGAGTATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTACATTACCTTCTAATCCCAAGCAACGAGTAACAGCCTGTTGGGAACCTACAGTAGTAGCTACTATCATTATTCCTAGTGAGTACGTTGGACCTGTCATTACCCTTGTCTCTGAACGTAGGGGTCAGCAATTGGAGTACTCATTCATTGACAGTCAACGGGTATTTATGAAGTATCGCCTGCCTTTGAGGGAAATTGTTGTTGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCATCATTTGATTATGAGGATTCAGATTATCAACTATCTGATCTGGTGAAACTCGATATACTCTTGAATGGGCAACCAGTTGATGCGATGGCAACCATAGTTCATAACTCGAAAGCATATCGTGTTGGGCGTGAACTGGTGGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTCGAGATATCTATACAAGCTGCCATTGGGTCAAAAGTTATAGCAAGGGAGACGATTTCCGCTATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACTCGAAAGAGGAAGCTATTGGAGAAGCAAAAGGAAGGTAAAAAGCGAATGAAACGTGTTGGTTCTGTTGACATACCACAAGAAGCATTCCATGAACTATTGAAGGTTTCATAG 2013 0.4302 MGYLSKASKSLRQSSCVSLLRNFTPLFSRITHQSLSVTPALFCSQSRQNSTKEKSTIDLTQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKYNVNGADCSDVKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKTMFDLDPSDALLTSAKTGKGLEQVLPAVIQRIPPPPGRSGAPLRMLLLDSYYDEYKGVICHVAVIDGALRKGDKISSAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRSSVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAVERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLEVQNPATLPSNPKQRVTACWEPTVVATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQLSDLVKLDILLNGQPVDAMATIVHNSKAYRVGRELVEKLKKVIDRQMFEISIQAAIGSKVIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00202 670 SUPERFAMILY EF-G C-terminal domain-like 474 568 IPR035647 -
Sebi2g00202 670 CDD EF4_III 365 440 - -
Sebi2g00202 670 CDD LepA 68 256 - -
Sebi2g00202 670 Gene3D Elongation Factor G (Translational Gtpase), domain 3 358 439 - -
Sebi2g00202 670 Gene3D - 65 258 IPR027417 -
Sebi2g00202 670 FunFam Translation factor GUF1, mitochondrial 440 552 - -
Sebi2g00202 670 Gene3D - 440 552 - -
Sebi2g00202 670 Hamap Elongation factor 4 [lepA]. 60 670 IPR006297 GO:0005525
Sebi2g00202 670 CDD lepA_C 475 554 IPR035654 -
Sebi2g00202 670 PANTHER TRANSLATION FACTOR GUF1-RELATED 42 669 IPR006297 GO:0005525
Sebi2g00202 670 FunFam Translation factor GUF1, mitochondrial 259 357 - -
Sebi2g00202 670 SUPERFAMILY Translation proteins 255 351 IPR009000 -
Sebi2g00202 670 Pfam GTP-binding protein LepA C-terminus 562 668 IPR013842 -
Sebi2g00202 670 FunFam Elongation factor 4 64 258 - -
Sebi2g00202 670 FunFam Translation factor GUF1, mitochondrial 554 628 - -
Sebi2g00202 670 FunFam Translation factor GUF1, mitochondrial 358 439 - -
Sebi2g00202 670 SUPERFAMILY EF-G C-terminal domain-like 366 443 IPR035647 -
Sebi2g00202 670 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Sebi2g00202 670 NCBIfam small GTP-binding protein domain 71 245 IPR005225 GO:0005525
Sebi2g00202 670 Pfam Elongation factor Tu GTP binding domain 67 254 IPR000795 GO:0003924|GO:0005525
Sebi2g00202 670 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Sebi2g00202 670 PRINTS GTP-binding elongation factor signature 199 208 IPR000795 GO:0003924|GO:0005525
Sebi2g00202 670 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Sebi2g00202 670 PRINTS GTP-binding elongation factor signature 147 157 IPR000795 GO:0003924|GO:0005525
Sebi2g00202 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 278 IPR027417 -
Sebi2g00202 670 CDD EF4_II 264 349 - -
Sebi2g00202 670 Gene3D Translation factors 260 357 - -
Sebi2g00202 670 Gene3D - 554 628 IPR038363 -
Sebi2g00202 670 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 257 IPR000795 GO:0003924|GO:0005525
Sebi2g00202 670 NCBIfam translation elongation factor 4 67 669 IPR006297 GO:0005525
Sebi2g00202 670 Pfam Elongation factor G C-terminus 475 559 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00202 Sebi-Chr2 4437782 4442236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00202 67 208 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 2.12e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00202 K21594 - gmx:100781092 1209.9