Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00163 ATGGATTCAGATTTTGCATATTTGGATCACATTCAACAATACCTTCTTGACGATGATTCAAGCATTCTAACATCAAATCATCTGCAACCTATTCCAAACCCTAATTCAAATGCAAATGCTTCAGCGGCGCGTGTAGTGAACGCGCCTCCGACATGGAAGCGTTACCGTGGCGTGAGGCGTAGGCCGTGGGGGAAATTCGCGGCGGAGATAAGAGACCCTAAGAAGAACAGCGCTAGGGTTTGGCTTGGAACTTATGTGACCGAAGAAGAAGCGGCTATGGCTTATGACAAAGCAGCTTTCAAGATGCGTGGCCGAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGCTCTGATCAAGTTTCGCCGGAGCCTTGTTCATCGGAGGATAGTTGTGAGCAATCACACTCACAGTCACAGGGGTCAAAGAGGAGGATTGTTGATATACTAAATAAGTTAGCAAAGAATAGAAGGCAAGCCAATTGGTGGTAA 489 0.4642 MDSDFAYLDHIQQYLLDDDSSILTSNHLQPIPNPNSNANASAARVVNAPPTWKRYRGVRRRPWGKFAAEIRDPKKNSARVWLGTYVTEEEAAMAYDKAAFKMRGRKAKLNFPHLIGSDQVSPEPCSSEDSCEQSHSQSQGSKRRIVDILNKLAKNRRQANWW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00163 162 CDD AP2 53 114 IPR001471 GO:0003700|GO:0006355
Sebi2g00163 162 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Sebi2g00163 162 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Sebi2g00163 162 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Sebi2g00163 162 FunFam Ethylene-responsive transcription factor 2 53 113 - -
Sebi2g00163 162 PANTHER DNA-BINDING DOMAIN 38 137 IPR044808 GO:0003700|GO:0009873
Sebi2g00163 162 MobiDBLite consensus disorder prediction 118 145 - -
Sebi2g00163 162 PRINTS Ethylene responsive element binding protein signature 94 114 IPR001471 GO:0003700|GO:0006355
Sebi2g00163 162 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Sebi2g00163 162 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Sebi2g00163 162 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Sebi2g00163 162 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00163 Sebi-Chr2 3704274 3704762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00163 54 122 AP2-EREBP Transcription Factor Family AT2G44840 79.710 9.68e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi2g00163 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00163 K09286 - gmx:102663872 189.119