Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00159 ATGGCTTCCACCACCATAGATTCCAAGTTTACATATTTAGAATCTGTTGAACTCCCACATCACTCCAACAATCTGATCGATATTTCTGAACTTAAAACCCACCAATATGCATCTCACTGTCCATTTTCAAACCCTAATTGTGAAAAAAATGAAATGGCTGCGGTGGCGCGTGAAGTGCACGCACCACCGACATGGAAACGATACCGAGGGGTGAGGCGGAGGCCATGGGGGAAGTTCGCGGCGGAGATCAGGGACCCGAAGAAGAACGGAGCTAGGGTTTGGCTTGGGACTTATGAGACTGAAGAAGAAGCAGCTATGGCTTATGACAAAGCTGCTTTCAAGATGCGTGGACAAAAAGCAAAGCTCAATTTTCCTCATCTCATTGGCTCTGATGATGTGCAATCGGAGCCGGTGAGATCAGTGGAGGTTTCCAAACGGAGGTTGCCGGAGATTTCTCCATCTTCATCGGAGGATAGTTGTGAGCAATCACAAGGGTCAAAGAGGAGGAGGAAGAGCATGATTGATCTATTGAATAAGTTAGCAAAGAGTCGAAGTCAAGCTAAGGTTGTTAAAATGGGATTAGAGGAAAATGACGTTAATCAATGGGTGAATGACTTCATTGATTGGAGTGTAATCTCGTGTGTGTAG 648 0.4552 MASTTIDSKFTYLESVELPHHSNNLIDISELKTHQYASHCPFSNPNCEKNEMAAVAREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAAMAYDKAAFKMRGQKAKLNFPHLIGSDDVQSEPVRSVEVSKRRLPEISPSSSEDSCEQSQGSKRRRKSMIDLLNKLAKSRSQAKVVKMGLEENDVNQWVNDFIDWSVISCV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00159 215 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Sebi2g00159 215 PRINTS Ethylene responsive element binding protein signature 107 127 IPR001471 GO:0003700|GO:0006355
Sebi2g00159 215 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Sebi2g00159 215 PANTHER DNA-BINDING DOMAIN 50 178 IPR044808 GO:0003700|GO:0009873
Sebi2g00159 215 MobiDBLite consensus disorder prediction 135 170 - -
Sebi2g00159 215 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Sebi2g00159 215 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Sebi2g00159 215 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Sebi2g00159 215 FunFam Ethylene-responsive transcription factor 2 66 126 - -
Sebi2g00159 215 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
Sebi2g00159 215 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00159 Sebi-Chr2 3660349 3660996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00159 41 175 AP2-EREBP Transcription Factor Family AT2G44840 58.088 6.00e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi2g00159 AP2 8.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00159 K09286 - gmx:548037 215.698