Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00108 ATGGGTGTGGCTCAAAACATTCTTGATATGGAGGAGGGAACCTTGGAGATTGGAATGGAATACAGAACTGTGTCTGGGGTTGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGATGCGATGCTTTCTTTATGGTGTGACACTGTGACTGAATTTTGTACTGATCAACTGCATCAGGGACCTAAATATCAAGAGATTGTTAACATTCGCTTAGGGGATGGAACTACTAGGCGTGGACAAGTTCTAGAAGTTGATGGTGAAAAAGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCGCTGGACATGCTTGGCCGCATATTTAATGGTTCAGGAAAACCAATTGATAATGGTCCACCCATATTACCTGAGGCTTACTTGGACATATCGGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAAATATGTCGTCAGGCTGGCTTAGTCAAGCGATTAGAGAAATCTGATAATCTTCTTGAGGATGGAGGAGAGGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATCACCCCTCGTATTGCTCTTACGACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACGGATATGAGTTCCTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCAGGTAGACGTGGGTATCCCGGATACATGTATACAGATCTTGCAACAATATATGAACGTGCTGGAAGGATTGAGGGGAGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACACATCCAACTCCTGATCTTACTGGATATATTACTGAGGGACAGATATATATTGACAGGCAGCTGCATAACAGGCAGATATACCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGAGTGCCATTGGTGAAGGAATGACACGAAGGGATCATGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTATATCTGGAATTTTTGGACAAATTTGAGAGGAAGTTTGTTACTCAAGGAGCTTATGATACCCGCAACATCTTCCAGTCTCTGGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGCGAGCTTCTTCATCGTATACCAGCCAAAACTCTTGATCAGTACTACAGCCGAGATGCCGGTAACTGA 1530 0.4268 MGVAQNILDMEEGTLEIGMEYRTVSGVAGPLVILDKVKDAMLSLWCDTVTEFCTDQLHQGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGGEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAGN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00108 509 Hamap V-type ATP synthase beta chain [atpB]. 18 507 IPR022879 -
Sebi2g00108 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 404 IPR027417 -
Sebi2g00108 509 ProSitePatterns ATP synthase alpha and beta subunits signature. 389 398 IPR020003 GO:0005524
Sebi2g00108 509 CDD V_A-ATPase_B 113 406 - -
Sebi2g00108 509 FunFam V-type proton ATPase subunit B, brain 52 509 - -
Sebi2g00108 509 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 506 IPR022879 -
Sebi2g00108 509 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 168 398 IPR000194 GO:0005524
Sebi2g00108 509 CDD ATP-synt_V_A-type_beta_N 20 112 - -
Sebi2g00108 509 NCBIfam V-type ATPase subunit B 20 507 IPR005723 GO:0033180|GO:0046961|GO:1902600
Sebi2g00108 509 PIRSF V-ATPsynth_beta/V-ATPase_B 11 509 IPR022879 -
Sebi2g00108 509 Pfam ATP synthase alpha/beta family, beta-barrel domain 61 111 IPR004100 GO:0046034|GO:1902600
Sebi2g00108 509 CDD ATP-synt_V_A-type_beta_C 408 502 - -
Sebi2g00108 509 Gene3D - 53 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00108 Sebi-Chr2 2543736 2549340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00108 1 509 Primary Pumps ATPases(2) AT4G38510 92.731 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00108 K02147 - cpap:110818953 935.636