Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00086 ATGGAAGATGAAATCTACTACAATCAAGATGGTGATAGCTCATTTGATGAGGAAGAGTTCCTCAAAGAGATCCTTCAGAAGCCAGATTTTTTCTCACCTGAAAGTGATGAACAACTTCTTCCCTCCCCTGATTCTTGTTGCAAAATCCAAAACGACAGTGTTGAAGGTGTTGGTGTCACAAGTCCTAGCAATAGTACCTTGTCCTTTGATGAGACAGGGTTTGATGGCAACAATGGCAGCCTCCAAAAGAGTAACAGCTCAAACTCCATCATGTCTTTGGAAAGATCATGTGTGTATTCTCCAGCTGGAGTTGGATACCTTTTATCTTTTGATAACTCAAGTGGTGTTGAACCAATTGCCCCTCAACCACCTAAAGGGAAGCATAATGATTTGGGATTGGGGTCCAATAAAAGGAAAGATGGGTTTGAATTTGAACCAAGAGTGGTGAATCAAGCAACAAAGAAGGGAAGGAGATCATCTGAGACAAAAGATGATCACATAATGGCTGAGAGGAAAAGGAGACAGGAATTGACAGGGAACATCATAGCACTTTCAGCAACTATACCTGGGTTGAAGAAGATGGACAAGGCTTATGTACTTGGTGAAGCGGTGAATTACGTGAAACAACTTCAAGAGCGTATTAAAGAATTGGAGAATCAAAACAGAGATAAAAGAGAAGATTCAGCAATATTCACAAGGAAAAAATCTCAACCTAATTCCTCAAATAATAATAAAAGCACCTCCTGTTGTGAAACGAACACAGAATCATCACTTGAGGTTGAAGCAAGAGTTGAAGAGAAGGAAGTACTAATTGGAATTCATTGTGAGAAACAAAAGGACATAGTGCTCAAAATACATGTCTTGCTTGCTGAAAAGCTCCATCTCTCTGTCACCAGTAGTACCGTATTACCATTTGGGACTTCTACTCTTATAATTAACATTGTTGCTCAGATGGGTGACGAATACCGTATTAGCATGGATGAGCTAGTGAAAAACCTGAGAGAATATCTATTGGAGGCATATAGCATGCAATGA 1035 0.3971 MEDEIYYNQDGDSSFDEEEFLKEILQKPDFFSPESDEQLLPSPDSCCKIQNDSVEGVGVTSPSNSTLSFDETGFDGNNGSLQKSNSSNSIMSLERSCVYSPAGVGYLLSFDNSSGVEPIAPQPPKGKHNDLGLGSNKRKDGFEFEPRVVNQATKKGRRSSETKDDHIMAERKRRQELTGNIIALSATIPGLKKMDKAYVLGEAVNYVKQLQERIKELENQNRDKREDSAIFTRKKSQPNSSNNNKSTSCCETNTESSLEVEARVEEKEVLIGIHCEKQKDIVLKIHVLLAEKLHLSVTSSTVLPFGTSTLIINIVAQMGDEYRISMDELVKNLREYLLEAYSMQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00086 344 Gene3D - 151 227 IPR036638 GO:0046983
Sebi2g00086 344 SMART finulus 167 216 IPR011598 GO:0046983
Sebi2g00086 344 MobiDBLite consensus disorder prediction 218 253 - -
Sebi2g00086 344 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Sebi2g00086 344 MobiDBLite consensus disorder prediction 218 232 - -
Sebi2g00086 344 PANTHER BHLH TRANSCRIPTION FACTOR 22 339 - -
Sebi2g00086 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 231 IPR036638 GO:0046983
Sebi2g00086 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Sebi2g00086 344 MobiDBLite consensus disorder prediction 54 73 - -
Sebi2g00086 344 MobiDBLite consensus disorder prediction 233 253 - -
Sebi2g00086 344 Coils Coil 200 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00086 Sebi-Chr2 2144239 2147532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00086 151 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.523 5.05e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi2g00086 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00086 - - aprc:113863851 385.956