Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00056 ATGTGTGGTATTTTGAATGGAACAGAAGTTGGTGAGATAGAATTGAACTTGGAGGAATGTTTCTGCACTCATGCGGGAATTGCTCACACGCGTTGGGCCACTCATGGAGAGCCTGCTCCAAGGAACAGTCATCCTCAAACCTCTGGTCCTGGCAATGAATTCTTGGTTGTTCATAATGGAGTTATTACTAATTATGAGGTTTTGAAGGAAACACTAGTCCGACATGGCTTTACCTTTGAATCTGAAACGGACACAGAAGTCATTCCCAAGCTTGCCAAGTATGTTTATGACAAAGCAAATGAAGCAGCAGGTGGTCAGGTTGTTACCTTCAGTCAAGTTGTTCTGGAAGTTATGAGACATCTTGAAGGAGCCTATGCCCTTATTTTCAAAAGTCTACATTATCCTAATGAATTGATTGCTTGCAAGCGCGGTAGCCCACTGCTCCTAGGTGTTAAAGAATTGACAGAAAATAAGGAAAATGGTTCCGCATTTGAGGATAACAAACTCCTATCAAAAGATGGACAGCCAAAAGAACTGTTCTTGTCTAGTGATGCCAATGCTGTGGTTGAGCATACAAAGAAAGTGCTGGTTATTGAGGATGGTGAAGTTGTTCATCTCAAGGATGGTGGGGTTTCTATTTTGAAGTTTGAGAATGACATAGGAGAACATGGCGCTTCTCTTTCCAGAACTTCTTCAGTGCGACGTGCATTGTCTGTTCTTGAGATGGAGGTTGAGCAAATAAATAAAGGACATTATGAGCATTATATGCAGAAGGAAATTCATGAGCAACCTGAGTCTCTAACAACCACAATGAGGGGGAGGCTTATACATCAAGGATCTAGCAAATCCAAGTCTGTTCTATTGGGTGGATTGAAGGATCACCTCAAAACCATTAGGCGAAGTAGAAGAATAGTTTTCATTGGCTGTGGTACAAGTTATAATGCTGCTTTGGCGGCTAGACCCATCTTGGAAGAACTTTCTGGTATTCCTGTTACAATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGACCAATATACCGAGAAGATACAGCCGTTTTTGTTAGTCAATCTGGTGAAACTGCAGACACTTTACTTGCACTGCAATATGCTTTAGACAATGGTGCATTATGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACACATTGTGGTGTTCATATAAATGCTGGTGCGGAGATTGGTGTGGCAAGTACCAAGGCATACACAAGCCAAATAGTAGTGATGGCCATGTTGGCTCTTGCAATAGGAGGCGATACAATTTCCAATCAAGCAAGGCGAGAAGCCATTATAGATGGTCTTTTTGACCTGCCGAATAAAGTCCGAGAGGTGCTAAAGCTTGATGAGGAGATGAAGGAACTGGCAAAGCTATTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACAACTATGCAACTGCTCTGGAGGGAGCTTTGAAAGTAAAGGAAGTGGCACTTATGCATAGTGAAGGGATACTTGCTGGTGAAATGAAGCATGGCCCTTTGGCATTAGTGGATGAAAATCTTCCAATTGTTGTTATAGCTACTCATGACGCTTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTCATGCCCGCAAAGGTCGCCTGATAGTTATGTGTTCAAAAGGGGATGCTGCTTCTGTGTGCCCTGGTGAATCGTGCAGGGTCATTGAAGTTCCACAGGTTGTGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGCCTCGTAATCTTGCCAAGAGTGTCACCACACAATGA 1809 0.4284 MCGILNGTEVGEIELNLEECFCTHAGIAHTRWATHGEPAPRNSHPQTSGPGNEFLVVHNGVITNYEVLKETLVRHGFTFESETDTEVIPKLAKYVYDKANEAAGGQVVTFSQVVLEVMRHLEGAYALIFKSLHYPNELIACKRGSPLLLGVKELTENKENGSAFEDNKLLSKDGQPKELFLSSDANAVVEHTKKVLVIEDGEVVHLKDGGVSILKFENDIGEHGASLSRTSSVRRALSVLEMEVEQINKGHYEHYMQKEIHEQPESLTTTMRGRLIHQGSSKSKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGIPVTMEIASDLLDREGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISNQARREAIIDGLFDLPNKVREVLKLDEEMKELAKLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVIATHDACFSKQQSVIQQLHARKGRLIVMCSKGDAASVCPGESCRVIEVPQVVDCLQPVINVVPLQPRNLAKSVTTQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00056 602 SUPERFAMILY SIS domain 249 601 IPR046348 GO:0097367|GO:1901135
Sebi2g00056 602 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 8 226 IPR029055 -
Sebi2g00056 602 Pfam Glutamine amidotransferase domain 24 129 - -
Sebi2g00056 602 Gene3D - 250 601 - -
Sebi2g00056 602 NCBIfam glutamine--fructose-6-phosphate transaminase (isomerizing) 13 596 IPR005855 GO:0004360|GO:1901137
Sebi2g00056 602 CDD SIS_GlmS_GlmD_1 303 428 IPR035466 -
Sebi2g00056 602 ProSiteProfiles SIS domain profile. 465 602 IPR001347 GO:0097367|GO:1901135
Sebi2g00056 602 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 1 209 IPR017932 -
Sebi2g00056 602 ProSiteProfiles SIS domain profile. 294 433 IPR001347 GO:0097367|GO:1901135
Sebi2g00056 602 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 17 219 IPR029055 -
Sebi2g00056 602 PANTHER GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 14 597 - -
Sebi2g00056 602 Pfam SIS domain 298 425 IPR001347 GO:0097367|GO:1901135
Sebi2g00056 602 Pfam SIS domain 469 560 IPR001347 GO:0097367|GO:1901135
Sebi2g00056 602 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 4 231 - -
Sebi2g00056 602 CDD SIS_GlmS_GlmD_2 460 600 IPR035490 -
Sebi2g00056 602 FunFam Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 250 469 - -
Sebi2g00056 602 Gene3D - 454 591 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00056 26 150 PRT Gene Family AT4G38880 29.457 2.56e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00056 K00820 - gmx:100779312 1100.5