Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00047 ATGGCTGACAGTTCCTCAGCCACCAACGATAATCAGAAAAGGGAGAATGCCACTTTGAAAGACTCGCAACCTCCAAAACAGGAACAGATAGTCCTTTTTGGCGATTCCCATTCTAAAACAGTGGAAGAAGGAAGAATATTTCAATTTCTTGCCAACCTTAATGAGGAGCTAGATGAAGTTCATGGAAGAATCATTGGGAGAGCAACCTTACCTTCACTAGGTGAGGTTTTTGCAGAAGTTAGAAGAGAGGAAACTCGCAGAAATGTGATGATGGGTAAAACCAAAGTTGACCCAACTCCTCCCGAGACCAATGCACTTGTTGTAGAAACTGCTGCCTTTAAGAGTTCAACCAACCAGAAGAACTCCTCAAATCTCTGGTGTGACCACTGTAATAAACCACGTCACACCCGAGAAACTTGCTGGAAAATTCATGGGATACCAGCACATATAAAAGGCAGCAAATCAGGTCCTAAAGCACCTAGACCTTTCCCTACAGCTCATGAGGTAGAAAAGACCTCTTTGAGCAAGGAACAAGTCGAGCAGCTGATAAGGTTGTTAAATTCTAGTTCTTTATCTGAAATAGAGGATACAGATTTAGTTGATCAAACAAATGAATATAACAAGGATGAATGTGTGGGAACAAGTCCTGAAAGTGATAAGGGAAACCTTGTGCCAAACTTAGATGGAGCCCAAACAGGGAAAGAAATACCACAATCAAAACAGGAGCTTCCTGTTTATACTCGAAAATGTCCTAAAAGGATCAGAAACCAACCCATCATCTTTGCACTTGACCAACCAGAAATTCCAGAGGGTCGTCCTGCAGAAATACCACAAGAACTTCCAGTGCTTTTCATTCTTGCCCAAGTCCATGTTCTTGACTTCTTTCTGCTACGCATAGCAAAACTGATGGCAGTCAACTTAGCCTCAAGTTGCCGGCGATCTGACCTTGGCGCTTATGAGGGTGACGAACCAAGCAAAAATTACGAGGGCGAAGGATTAGCCGGCAGCGGAGGTGTGGCCGGTGACGACGGCAATGGTGGGCATGAGGAGGGAGTGGAGATCGAAGACGACGAAGCGGAGGAGGTTGTCGATGAGGAGCACACAGTCTTGCATGGATTGGGCCCAGGCAAGGTTGTAGCCATTGGAGAAGAATTTGTCGTGTGCGGTGGTGATGAGGGCAGAGAAGGTGGTGGTTTCTTGGTAGACGCGGCGGAGGGCATATTAGATGAAGGCAGAAGCAAAACTGAGAAGACAACAGCGGCGGCTACCAATGTTCTGCAGGTGTTGTTGTTACTTTTCTTGAAAGGTTCAAGATCTTGTCTAGTTTCCTTTTCTGTTCCTTCCTTCCACCACCTTCCACCACCGGCTCCGCCACCTACTTCGGTTTTGACCATATATTTTGCCCGTGAAAGGCTTGTCTGTGACGATGGCTTTCCCAAACTCCGATCTGAAATACCATTCGCTGATCCTACGGCGATATTCCTTTGTCTCCTGCTCAAGTCACGTTTGCCTCTGGCTGAAACTCTCCTTCCCCTCCTCCTCGCCTTCCCTGAGAGAAAACAATCGTCAAAATCCAAGTACCTCATGGAAGGCTCTATCAGTACTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCCAGCATTATAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACCCCTGTCGTCATTGTCATAACGAGGAAACGAGCATGTTGAGGAATCCCTTTGATCGGCATGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTTTGCAACATCTGCAAATTCTTTGATGATGATACAGAGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGGCAAGAGAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGCTATTCCGTCAATCTGCGTGATAATCACTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATCTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTATTGTCATGAAATGTGGTCACACAATGCACTTTGAATGTTACCAAGAGATGATAAAACGTGACAAGTACTCTTGTCCCATATGCTCCAAGTCAGTGGTTGACATGTCTATGATTTGGAAGAGAATTGATCAAGAGATTGAAGCTACTGTCATGCCTGAAGTTTATCGGTACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTGTTGGGCAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCAATTGCACCTCCGGTTCTTCCTCAATGA 2391 0.4504 MADSSSATNDNQKRENATLKDSQPPKQEQIVLFGDSHSKTVEEGRIFQFLANLNEELDEVHGRIIGRATLPSLGEVFAEVRREETRRNVMMGKTKVDPTPPETNALVVETAAFKSSTNQKNSSNLWCDHCNKPRHTRETCWKIHGIPAHIKGSKSGPKAPRPFPTAHEVEKTSLSKEQVEQLIRLLNSSSLSEIEDTDLVDQTNEYNKDECVGTSPESDKGNLVPNLDGAQTGKEIPQSKQELPVYTRKCPKRIRNQPIIFALDQPEIPEGRPAEIPQELPVLFILAQVHVLDFFLLRIAKLMAVNLASSCRRSDLGAYEGDEPSKNYEGEGLAGSGGVAGDDGNGGHEEGVEIEDDEAEEVVDEEHTVLHGLGPGKVVAIGEEFVVCGGDEGREGGGFLVDAAEGILDEGRSKTEKTTAAATNVLQVLLLLFLKGSRSCLVSFSVPSFHHLPPPAPPPTSVLTIYFARERLVCDDGFPKLRSEIPFADPTAIFLCLLLKSRLPLAETLLPLLLAFPERKQSSKSKYLMEGSISTERLDFGKMGYGCQHYRRRCRIRAPCCNEIYPCRHCHNEETSMLRNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGQENFFHCKKCGSCYSVNLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHFECYQEMIKRDKYSCPICSKSVVDMSMIWKRIDQEIEATVMPEVYRYRKVWILCNDCNDTTEVYFHIVGQKCGHCSSYNTRAIAPPVLPQ 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00047 796 MobiDBLite consensus disorder prediction 1 27 - -
Sebi2g00047 796 FunFam RING finger and CHY zinc finger domain-containing protein 1 753 794 - -
Sebi2g00047 796 MobiDBLite consensus disorder prediction 315 353 - -
Sebi2g00047 796 SUPERFAMILY Zinc hairpin stack 618 675 IPR037275 -
Sebi2g00047 796 Gene3D - 755 791 - -
Sebi2g00047 796 CDD RING-H2_Pirh2-like 681 725 - -
Sebi2g00047 796 Pfam CHY zinc finger 547 627 IPR008913 GO:0008270
Sebi2g00047 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 754 IPR013083 -
Sebi2g00047 796 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 358 792 - -
Sebi2g00047 796 SMART ring_2 682 724 IPR001841 -
Sebi2g00047 796 MobiDBLite consensus disorder prediction 151 174 - -
Sebi2g00047 796 SUPERFAMILY CHY zinc finger-like 544 616 IPR037274 GO:0008270
Sebi2g00047 796 ProSiteProfiles Zinc finger CHY-type profile. 540 615 IPR008913 GO:0008270
Sebi2g00047 796 SUPERFAMILY RING/U-box 681 734 - -
Sebi2g00047 796 ProSiteProfiles Zinc finger RING-type profile. 682 725 IPR001841 -
Sebi2g00047 796 Pfam Zinc-ribbon 729 787 IPR039512 -
Sebi2g00047 796 Pfam Ring finger domain 681 724 IPR001841 -
Sebi2g00047 796 ProSiteProfiles Zinc finger CTCHY-type profile. 617 681 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00047 Sebi-Chr2 1044822 1054722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00047 542 795 C2H2 Transcription Factor Family AT3G18290 40.541 1.63e-55 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00047 K10144 - gmx:100792038 542.732