Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00042 ATGGGGATGATTGTGGAGGTTGAAAATGGAGACGAAAACGACGCCGTTCTGGTCCCGCCGCCCAACTTCTCCATGGTAGAGGACTGCATTTACCGATCCAGTTTTCCTCATCCTTCCAATTTCCCCTTCCTCCGAACCCTAAACCTTCGCTCCGTCATATACTTGTGCACTGAGCCCTATCCAGAAGAAAATTTAGAGTTCCTTCGCTCACAGAATATTCGCCTCTTTCAATTTGGAATTGAGGGGAAGACGGATGTTTCTTTGCCTATTCTCAAGGATTCTATCATGGAGGCTCTGAAAGTTTTAATTGATGTGAGAAATCACCCAGTTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTGCCTCGTTGGTTGCTTTAGAAAATTGCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCTGGTGTTAAATCCAGGATAACGGATTTAACATTCATAGAAATGTTTGACATCATAAGCCTGAGGCAGTGCCTTTACAGCATCATCTACCAGTACCAAGGTTATGGTTCAAAGAAGCGTCGATTGTTGTATAAAGAGGAGAATTTACAGAAGCCTCCCCGTCTGGCATCATTTTAG 615 0.4358 MGMIVEVENGDENDAVLVPPPNFSMVEDCIYRSSFPHPSNFPFLRTLNLRSVIYLCTEPYPEENLEFLRSQNIRLFQFGIEGKTDVSLPILKDSIMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYQRFAGVKSRITDLTFIEMFDIISLRQCLYSIIYQYQGYGSKKRRLLYKEENLQKPPRLASF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00042 204 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Sebi2g00042 204 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 175 - -
Sebi2g00042 204 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Sebi2g00042 204 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Sebi2g00042 204 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Sebi2g00042 204 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Sebi2g00042 204 CDD PFA-DSP_Siw14 17 163 - -
Sebi2g00042 204 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Sebi2g00042 204 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
Sebi2g00042 204 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
Sebi2g00042 204 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
Sebi2g00042 204 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 187 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00042 Sebi-Chr2 940766 942311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00042 3 203 Protein tyrosine phosphatase (PTP) family AT3G02800 68.657 3.14e-104 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00042 K18045 - gmx:100787713 361.688