Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00037 ATGTGGCAAATGAACTTGAGGTCGAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGGACTGGCCTTTGTAGATTCGGAGCAACATGTCGATTTAATCATCCTCCTAACAGAAAGCTGGCTATTGCCACAGCGCGGATGAAAGGCGAGTACCCAGAAAGGATAGGGCAGCCAGAATGTCAGGCATTACTACTTGAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTACCCACTCCGCCCAAATGAGCCTGAATGTGCATATTATTTAAGGACTGGACAGTGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGTAATATGATGCTTTCAATGCGGAGTTCTCCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAACAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCCTATATTGCCAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCATCCTTAATTCTACCTCAAGGAGTGGTTTCAGTTCCTGGGTGGAGTGCATACAATGGTCAAATGGGATCAGACAGCTCACAGCAGACAATGGGAAATGATCAAACCTATGGAACTTCTCGCCAAGGTGAACCAGCAAATGCAGGATCCCAAGGGACTTATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGATTCTATGCATTGCAGAGGGAGAGCATATTTCCTGAGAGACCTGATCAGCCTGAATGCCAGTTCTACATGAAGACTGGAGATTGCAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGATTATTCCTGCTCCTGACTGTGTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGTGAGTTGA 957 0.4566 MWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEYPERIGQPECQALLLETGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMMLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIASPRWQGPSSYASLILPQGVVSVPGWSAYNGQMGSDSSQQTMGNDQTYGTSRQGEPANAGSQGTYSQFRSGSVPVGFYALQRESIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERIIPAPDCVLSPIGLPLRPVS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00037 318 MobiDBLite consensus disorder prediction 211 245 - -
Sebi2g00037 318 MobiDBLite consensus disorder prediction 1 20 - -
Sebi2g00037 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 76 93 IPR000571 GO:0046872
Sebi2g00037 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 22 47 IPR000571 GO:0046872
Sebi2g00037 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 139 IPR000571 GO:0046872
Sebi2g00037 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 296 IPR000571 GO:0046872
Sebi2g00037 318 PANTHER PROTEIN PHOSPHATASE RELATED 8 316 - -
Sebi2g00037 318 ProSiteProfiles Zinc finger C3H1-type profile. 112 140 IPR000571 GO:0046872
Sebi2g00037 318 SMART c3hfinal6 20 47 IPR000571 GO:0046872
Sebi2g00037 318 SMART c3hfinal6 269 296 IPR000571 GO:0046872
Sebi2g00037 318 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Sebi2g00037 318 SMART c3hfinal6 112 139 IPR000571 GO:0046872
Sebi2g00037 318 SUPERFAMILY CCCH zinc finger 115 140 IPR036855 GO:0046872
Sebi2g00037 318 SUPERFAMILY CCCH zinc finger 25 48 IPR036855 GO:0046872
Sebi2g00037 318 SUPERFAMILY CCCH zinc finger 272 298 IPR036855 GO:0046872
Sebi2g00037 318 Gene3D - 258 303 - -
Sebi2g00037 318 Gene3D - 64 151 - -
Sebi2g00037 318 Gene3D - 7 57 - -
Sebi2g00037 318 ProSiteProfiles Zinc finger C3H1-type profile. 21 48 IPR000571 GO:0046872
Sebi2g00037 318 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Sebi2g00037 318 ProSiteProfiles Zinc finger C3H1-type profile. 269 297 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00037 Sebi-Chr2 857723 862532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00037 1 316 C2H2 Transcription Factor Family AT3G02830 66.770 9.10e-147 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi2g00037 zf-CCCH 4.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00037 - - gmx:100786261 637.876