Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi2g00013 ATGGAGTTTCACTACCTTTACATTCTCTCCACAATCCTGCTCTTATATCTGTTTCTTCCATCAATCAACTGCCAACAAGTATACCTTAATACCACTGTCACAGACTGCTCTGACAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGTGCTCAAAAATCATGCACTTCCTTCTTAGTTTTCAGGTCCAAACCTCCCTATGACAACCCTATAAGAATTGCCTACCTTCTTGGTTCTGAAGCATCTAACATAGCCTCAATCAACAAGATCTCAACAAATGACATGATTCCATCCAATAAATCAATCATTGTCCCTGTCTTTTGTTCATGTTCTGGAAATATATATCAGCATAACACCCCTTACACTGTCAACAAGGATGACACCTACTTTATGTTGGTAAATGGAACTTACCAAAGCCTCACCACCTGCCAGGCATTGATGGGTCAGAATTATTATTCTGCTGATAACATTGCAATTGGTGCTGAGCTCACTGTTCCATTACTATGTGCTTGTCCCACCACAAACCAGACGGCAAGAGGGGTCACCTCCTTGCTGGTTTACTCAGTGACGGATGGTGACACCATTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGCTAGAGGCCAATGGGTTGCCAGTGCCTCCAAGTGCAAACAGCAGCATGACCATCTTTGCCATGACACCTATCTTAGTTCCTCTCAGAGGCAAAAGTTGCAAAGAGGACCCGGATAGTTTCTATTGTACCTGTTCCCAGGGGATGCTTGCTGATGGAAGCTCCAAGGGACTCAACTGTGATGAATCTGATGGTCAAAAATTTCCTGTCAAATTGGTTGCTTCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGGTTATATCAATATGTACAGAAAAGGAGGGAAAGTATTCGAAAGGAAACGCTGTTCAGGCAAAACGGTGGCTATTTGTTACAAGAGAAGTTGTCATCTTATGGACATGGAGAAAAGGCAAAGCTTTTTATTGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCAGAGTAGGTTTCTTGGCCAGGGTGGCTATGGCATGGTGTACAAAGGAATGTTACCAGATGGAACTATAGTTGCAGTTAAGAAGTCAAAAGAAATTGAAAGGAACCAGATGGAAACTTTTGTTAATGAAGTGGTCATTTTATCACAGATCAACCACAGGAACATTGTGAAACTCTTAGGTTGTTGTCTTGAGACAGAAACTCCTTTGCTAGTCTATGAATTTATTCCCAATGGAACTCTCTCCCAACATATCCATAGAAAAGACCATGAGTCATCCCTTCCATGGGACAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTAGCATATATGCATTTTTCAGCCACTGTTCCCATCTTCCACAGAGACATCAAACCCACCAACATACTCCTGGACAGTAACTACAGTTCCAAAGTGTCAGATTTTGGGACATTAAGATCAGTCCCACAAAATAAGACTCACTTAACCACAGCTGTAGGAGGAACTTTTGGGTATATAGACCCTGAATATTTCCAGTCCAGTCAATTTACAGATAGGAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACAGGGAGAAAACCATTCTTAGAAGAAGAAGAGGGTCAGAATGTAATTGCACAATTCATTTCTTTGATGAAGGAGAATCAGATTTCTAACATTTTAGATGCCAGAGTGGTCAAGGAAGCAAGGAAAGATGACATTCTTGCCATCGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAGAGACCAACAATGAAAGAGGTGTCAGCAGAGCTAGATGCATTAAGAAAGATACAAGATTCCTCACAGATCAACTCTGTTCATGAGTCAGCAATTGATGTAGAATCACTGAAGTACCCCACTAGTGAAGCAGCACAAGATTCCACAGAGGAAAGCTTTATGCTATCCCTACAAATAGAGTCCACGTCCTTTTAA 2028 0.4177 MEFHYLYILSTILLLYLFLPSINCQQVYLNTTVTDCSDNPSAPKGYLCNGAQKSCTSFLVFRSKPPYDNPIRIAYLLGSEASNIASINKISTNDMIPSNKSIIVPVFCSCSGNIYQHNTPYTVNKDDTYFMLVNGTYQSLTTCQALMGQNYYSADNIAIGAELTVPLLCACPTTNQTARGVTSLLVYSVTDGDTIKSIGEAYGVDEQSMLEANGLPVPPSANSSMTIFAMTPILVPLRGKSCKEDPDSFYCTCSQGMLADGSSKGLNCDESDGQKFPVKLVASLGVGIGAGFLCLFLLGYRLYQYVQKRRESIRKETLFRQNGGYLLQEKLSSYGHGEKAKLFIAEELQRATDNYNQSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQMETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHRKDHESSLPWDSRLRIACEVAGAVAYMHFSATVPIFHRDIKPTNILLDSNYSSKVSDFGTLRSVPQNKTHLTTAVGGTFGYIDPEYFQSSQFTDRSDVYSFGVVLVELITGRKPFLEEEEGQNVIAQFISLMKENQISNILDARVVKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELDALRKIQDSSQINSVHESAIDVESLKYPTSEAAQDSTEESFMLSLQIESTSF 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi2g00013 675 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Sebi2g00013 675 Gene3D Phosphorylase Kinase; domain 1 328 430 - -
Sebi2g00013 675 FunFam Wall-associated receptor kinase 2 431 645 - -
Sebi2g00013 675 SUPERFAMILY Protein kinase-like (PK-like) 339 621 IPR011009 -
Sebi2g00013 675 FunFam Wall-associated receptor kinase 2 326 430 - -
Sebi2g00013 675 SMART serkin_6 355 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi2g00013 675 Pfam LysM domain 187 217 IPR018392 -
Sebi2g00013 675 CDD STKc_IRAK 361 626 - -
Sebi2g00013 675 ProSiteProfiles Protein kinase domain profile. 355 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi2g00013 675 Pfam Protein kinase domain 355 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi2g00013 675 SMART LysM_2 120 166 IPR018392 -
Sebi2g00013 675 SMART LysM_2 66 105 IPR018392 -
Sebi2g00013 675 SMART LysM_2 186 236 IPR018392 -
Sebi2g00013 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Sebi2g00013 675 Gene3D Transferase(Phosphotransferase) domain 1 431 649 - -
Sebi2g00013 675 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 102 630 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi2g00013 Sebi-Chr2 378938 381198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi2g00013 285 636 Receptor kinase-like Gene Family AT1G16130 55.899 1.84e-135 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi2g00013 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi2g00013 - - vun:114186184 1047.34