Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00211 GGAAGGCAAGTGTGGCAAGGAAGCATGGCTCCAGAAATGGTTTTGGATGATAGCGCTTCGGCTGAGACTGGCACCAAACTGTATATATCTAACTTGGACTATGGGGTTTCCAGTGAAGATATTAAGCTGCTTTTTTCTGAAGAGGGTGAGTTGAAAAGACACTGCATTCATCATGACAAGAGTGGGAGATCAAAAGGAACTGCTGAAGTTGTCTTTACTAGGCACTCTGATGCCTTAGCAGCTATCAAGAGATACAACAATATGAGGCTTGATGGAAAGCCATTGAAGATTGAGCTTGTTGGAACAAGTTTCGTTACTCCTCCTGTTATGCCCCTTTATCAAAATAGCTTACTGGGAAGACCAAATGATTTTCTTGCAAGCGAACAAGGAAAGGTTGGAGGTAGCAGGTTCTATAATGGCTTTGCACGTGGCCCTCTTCCAAGGGGCCATAGAGAAGAGACAGGCCGTATTCGGACGGGATCTTTTAGAGATCTTGATCATGGCTCGGAGAGGTATCACCACCGTCCAAGAGGCCACACAGAAGTGAAGGGCCATATTCCTAAAGTGTCTGTTAGAGATCTTGATGAAGACTTGGAGAGGTATCATTTAGAGGCTATGCAGATAAAAAAGAAACTGGAAAGTGAAATCATGATTGATAGCTAG 663 0.4404 GRQVWQGSMAPEMVLDDSASAETGTKLYISNLDYGVSSEDIKLLFSEEGELKRHCIHHDKSGRSKGTAEVVFTRHSDALAAIKRYNNMRLDGKPLKIELVGTSFVTPPVMPLYQNSLLGRPNDFLASEQGKVGGSRFYNGFARGPLPRGHREETGRIRTGSFRDLDHGSERYHHRPRGHTEVKGHIPKVSVRDLDEDLERYHLEAMQIKKKLESEIMIDS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00211 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Sebi29g00211 220 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 19 207 - -
Sebi29g00211 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 96 IPR000504 GO:0003723
Sebi29g00211 220 SUPERFAMILY RNA-binding domain, RBD 18 105 IPR035979 GO:0003676
Sebi29g00211 220 SMART rrm1_1 26 98 IPR000504 GO:0003723
Sebi29g00211 220 MobiDBLite consensus disorder prediction 161 181 - -
Sebi29g00211 220 CDD RRM_THOC4 25 99 - -
Sebi29g00211 220 Gene3D - 11 181 IPR012677 -
Sebi29g00211 220 Coils Coil 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00211 Sebi-Chr29 2919532 2920820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00211 17 100 Eukaryotic Initiation Factors Gene Family AT2G23350 34.524 3.02e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00211 K12881 - gmx:100785926 267.314