Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00196 ATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTCTTCGTGTAGTGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACACTCTGAACTTTTGA 1260 0.3571 MASRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIADLKEVTQNSVFVTIGTVKDIESEYNWCYRASSCSETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDTLNF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00196 419 Gene3D - 8 115 IPR012340 -
Sebi29g00196 419 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi29g00196 419 CDD RPA1_DBD_B_like 142 247 - -
Sebi29g00196 419 Gene3D - 315 399 IPR012340 -
Sebi29g00196 419 SUPERFAMILY Nucleic acid-binding proteins 16 115 IPR012340 -
Sebi29g00196 419 SUPERFAMILY Nucleic acid-binding proteins 279 381 IPR012340 -
Sebi29g00196 419 SUPERFAMILY Nucleic acid-binding proteins 122 248 IPR012340 -
Sebi29g00196 419 CDD RPA1_DBD_A_like 21 109 - -
Sebi29g00196 419 Gene3D - 116 257 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00196 Sebi-Chr29 2632492 2634671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00196 20 238 Core DNA Replication Machinery Family AT2G06510 28.509 5.94e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00196 - - adu:107477146 403.675