Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi29g00194 | ATGGCAAATTATTTGATGTTTCTTTCTCGTGGTGATCAATTTGAAGGTAGCAACTCCTATAACAGCCGTGTGTTTGAATGCAAGACATGTAACAGACAATTCCCTTCATTTCAAGCACTTGGTGGACACAGGGCTAGTCACAAGAAGCCAAGGTTGGTGGCAGAGAATGGAGACATGATGATGGATGGTCTTCTTGGTTCACCACCAAAGCCTAAAACCCATGAGTGTTCTGTTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTGGGTGGTCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACATCACTATGAGTAATAGTAGTGGTGGTAGCAGTCTTGATTCTTCATCACCAAACATGAAAGCTGCTGGTAGCAACAAGAGATCATCATCATCAGTTTTGGCTTTGGATTTGAATTTGACACCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTGTCTTGGGTGATTATTTGTATTGA | 501 | 0.4172 | MANYLMFLSRGDQFEGSNSYNSRVFECKTCNRQFPSFQALGGHRASHKKPRLVAENGDMMMDGLLGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRAANLNGNITMSNSSGGSSLDSSSPNMKAAGSNKRSSSSVLALDLNLTPFENDLEFLKIGKPTVLGDYLY | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi29g00194 | 166 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 27 | 47 | IPR013087 | - | |
Sebi29g00194 | 166 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 25 | 52 | IPR013087 | - | |
Sebi29g00194 | 166 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 74 | 101 | IPR013087 | - | |
Sebi29g00194 | 166 | SMART | c2h2final6 | 25 | 47 | IPR013087 | - | |
Sebi29g00194 | 166 | SMART | c2h2final6 | 74 | 96 | IPR013087 | - | |
Sebi29g00194 | 166 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 76 | 96 | IPR013087 | - | |
Sebi29g00194 | 166 | Pfam | C2H2-type zinc finger | 24 | 50 | - | - | |
Sebi29g00194 | 166 | Pfam | C2H2-type zinc finger | 74 | 98 | - | - | |
Sebi29g00194 | 166 | Gene3D | Classic Zinc Finger | 23 | 96 | - | - | |
Sebi29g00194 | 166 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 17 | 148 | - | - | |
Sebi29g00194 | 166 | MobiDBLite | consensus disorder prediction | 103 | 131 | - | - | |
Sebi29g00194 | 166 | SUPERFAMILY | beta-beta-alpha zinc fingers | 23 | 96 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi29g00194 | Sebi-Chr29 | 2604640 | 2605140 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi29g00194 | 1 | 160 | C2H2 Transcription Factor Family | AT2G37430 | 45.181 | 7.28e-38 | 126 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Sebi29g00194 | zf-C2H2_6 | 5.1e-10 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi29g00194 | - | - | gmx:100781134 | 216.853 |