Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00194 ATGGCAAATTATTTGATGTTTCTTTCTCGTGGTGATCAATTTGAAGGTAGCAACTCCTATAACAGCCGTGTGTTTGAATGCAAGACATGTAACAGACAATTCCCTTCATTTCAAGCACTTGGTGGACACAGGGCTAGTCACAAGAAGCCAAGGTTGGTGGCAGAGAATGGAGACATGATGATGGATGGTCTTCTTGGTTCACCACCAAAGCCTAAAACCCATGAGTGTTCTGTTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTGGGTGGTCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACATCACTATGAGTAATAGTAGTGGTGGTAGCAGTCTTGATTCTTCATCACCAAACATGAAAGCTGCTGGTAGCAACAAGAGATCATCATCATCAGTTTTGGCTTTGGATTTGAATTTGACACCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTGTCTTGGGTGATTATTTGTATTGA 501 0.4172 MANYLMFLSRGDQFEGSNSYNSRVFECKTCNRQFPSFQALGGHRASHKKPRLVAENGDMMMDGLLGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRAANLNGNITMSNSSGGSSLDSSSPNMKAAGSNKRSSSSVLALDLNLTPFENDLEFLKIGKPTVLGDYLY 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00194 166 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Sebi29g00194 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Sebi29g00194 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Sebi29g00194 166 SMART c2h2final6 25 47 IPR013087 -
Sebi29g00194 166 SMART c2h2final6 74 96 IPR013087 -
Sebi29g00194 166 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Sebi29g00194 166 Pfam C2H2-type zinc finger 24 50 - -
Sebi29g00194 166 Pfam C2H2-type zinc finger 74 98 - -
Sebi29g00194 166 Gene3D Classic Zinc Finger 23 96 - -
Sebi29g00194 166 PANTHER ZINC FINGER PROTEIN ZAT5 17 148 - -
Sebi29g00194 166 MobiDBLite consensus disorder prediction 103 131 - -
Sebi29g00194 166 SUPERFAMILY beta-beta-alpha zinc fingers 23 96 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi29g00194 Sebi-Chr29 2604640 2605140 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00194 1 160 C2H2 Transcription Factor Family AT2G37430 45.181 7.28e-38 126
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi29g00194 zf-C2H2_6 5.1e-10 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00194 - - gmx:100781134 216.853