Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00190 ATGGCAGCCATGCTACGCAATGAAGTCGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCATTTAGCAACCGACTTTCCATATTTATACAGGACAGTGCCGCAGTTATTGTTGGTCTTCTCATTGGTGTTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCGATTCTCTGCATTTCTGCATTTGCCCAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTCAGAAACATATACACTGTCGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTCGCATTCGGATTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCGATATGTATAAAAAATGGTTACATGAATCCACCTACTGCGCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTTTGGCTCCTTACATACTTAAACGGAGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGGAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGACCTGAATTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGGTCAGGAAAAAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCGGGGCAAGTTTTACTGGATGGGAGGGATTTAAAGCTTTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAGCCTATTATCTTCTCAACAACAATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCACGTAGGGATGAGAGGTGTTGATTTAACCCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTGGTGCTGAAAAATGCACCTATCTTATTGTTGGATGAAGCAAGTTCATCAATTGAATCTGAGTCAAGCCGAGTAGTACAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCTCATAGAGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATTCATTGGTGGCAAAGAATGATGAATCACTGGTGACTTGTGCACCTGATGGAGTTTTCCAAGAATGTCAAGTGGAAATTATGGGTGGCAATGTAATGATGGAGCTTGGATTAGCACTCGGCACTGGTAGGCATAGGAAGAGAATACTTTAG 1506 0.4143 MAAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGVLLHWRLALVAFATLPILCISAFAQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKNGYMNPPTALKEYMVFSFATFALVEPFLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNDESLVTCAPDGVFQECQVEIMGGNVMMELGLALGTGRHRKRIL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00190 501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 184 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi29g00190 501 Pfam ABC transporter transmembrane region 2 178 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi29g00190 501 CDD ABC_6TM_Pgp_ABCB1_D2_like 1 213 - -
Sebi29g00190 501 SUPERFAMILY ABC transporter transmembrane region 2 215 IPR036640 GO:0005524|GO:0016020
Sebi29g00190 501 SMART AAA_5 257 444 IPR003593 GO:0016887
Sebi29g00190 501 Gene3D - 220 458 IPR027417 -
Sebi29g00190 501 Gene3D ABC transporter type 1, transmembrane domain 2 83 IPR036640 GO:0005524|GO:0016020
Sebi29g00190 501 FunFam ABC transporter B family member 6 78 227 - -
Sebi29g00190 501 Pfam ABC transporter 248 396 IPR003439 GO:0005524
Sebi29g00190 501 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 458 IPR039421 -
Sebi29g00190 501 FunFam ABC transporter B family member 20 220 466 - -
Sebi29g00190 501 Gene3D ABC transporter type 1, transmembrane domain 84 219 IPR036640 GO:0005524|GO:0016020
Sebi29g00190 501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 230 467 IPR003439 GO:0005524
Sebi29g00190 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 459 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00190 Sebi-Chr29 2565625 2568505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00190 1 471 Calmodulin-binding Proteins AT2G36910 41.443 2.46e-126 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00190 K05658 - gmx:100789116 835.099