Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00188 ATGATGATATCGAGGGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAGCCGCTGACGCCGGTTTCGGAGGTGTCAGAGCCGCCGGAGTCTCCGTCGCCCTACCTGGACCTCGGCGCCGAGACCTCCGCGTCGCAGCAGGTGGAAGTCGAGGAGGAGATGGAGGAACCGGAGGAGATCGAGCCGCCGCCAGCAGCGGTTCCTTTCTCGCGGCTCTTTAAATGCGCCGACCGGTTCGATTGGTTCCTCATGGCCGTCGGTTCCATCGCCGCCGCGGCTCACGGTACCGCGCTCGTTGTTTACTTGCACTACTTCGCTAAGATCATCCATGTTCTGCGGATGGATCCGCATAAGCAGCAGGAGCAGTTTGACAGGTTCACAGAGCATGCTCTTTATTTCATAATTGCACCTCTTGCATTGAATTGGCACAATGTTGCTTTAGATTTTGCATTCCTTTTCAACTTCCTGAAATTGCCATATTCTTACCTTGCCGGGTTATTGTGGGTAACTAGCCTTAAAAGCTTCATATTTGTGTTAACTGTTATATGGGATTATTACGTTCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATCTTGACTGGAGAACGACAGACTGCTGTCATCAGGTCCAAATATGTTCAAGTATTACTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAATAACGGAGACATTGTGAGTCAAGTATTGAGTGACGTGCTGCTTATCCAGTCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATAGCTTTGATAACATTAGCCACGGGTCCTTTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATCAGGACATTGTATGCATTTACAAATGAAACATTGGCCAAGTACTCATATGCAACATCACTCCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGAAAAAGCGCATGGTGGTGAAATTATAACAGCCCTGTTCGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACGAATTTCTATTCATTTGATCAAGGGAGAATAGCTGCTTATAGGCTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGATGGCACTACACCTGATTCTGTGCAAGGAAATATAGAGTTTCGAAATGTTTACTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGTGAAGTTCTTCTAGATGGAGAAAACATCAAAATTTGA 1599 0.4396 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDLGAETSASQQVEVEEEMEEPEEIEPPPAAVPFSRLFKCADRFDWFLMAVGSIAAAAHGTALVVYLHYFAKIIHVLRMDPHKQQEQFDRFTEHALYFIIAPLALNWHNVALDFAFLFNFLKLPYSYLAGLLWVTSLKSFIFVLTVIWDYYVLALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHEKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTTPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00188 532 PANTHER ABC TRANSPORTER B FAMILY 48 531 IPR039421 -
Sebi29g00188 532 Coils Coil 310 330 - -
Sebi29g00188 532 MobiDBLite consensus disorder prediction 18 61 - -
Sebi29g00188 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 530 IPR027417 -
Sebi29g00188 532 Pfam ABC transporter transmembrane region 173 414 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi29g00188 532 Gene3D - 454 531 IPR027417 -
Sebi29g00188 532 CDD ABC_6TM_Pgp_ABCB1_D1_like 187 439 - -
Sebi29g00188 532 FunFam ABC transporter B family member 20 172 466 - -
Sebi29g00188 532 Gene3D ABC transporter type 1, transmembrane domain 70 453 IPR036640 GO:0005524|GO:0016020
Sebi29g00188 532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 173 431 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi29g00188 532 Pfam ABC transporter 485 531 IPR003439 GO:0005524
Sebi29g00188 532 SUPERFAMILY ABC transporter transmembrane region 70 444 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00188 Sebi-Chr29 2558296 2563837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00188 53 531 Calmodulin-binding Proteins AT2G36910 36.175 5.19e-97 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00188 K05658 - csin:114299355 758.444