LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi29g00186	ATGGGTTTATGCTTTAATGGACTAATGCAATTTAGTGTTATACGTATATGCAGGGGCTTTTCAGAAGTATTGGTGAGAGTTTGCAATGGCTCCTTCAAAGTGGACAATGCTAAAAAAGCTGATCCCAAGGCTCAGGCCTTGAAGACAGCCAAGGCTGTTAAATCAGGTGGCCAAGTGCTTAAGAAGAAAGCTAAAAAGATCAGGACATCAGTCACATTTCACCGGCCAAAGACATTGACGAAGGAAAGGAACCCTAAGTATCCCCGCATTAGTGCAACACCAAGAAACAAGTTGGACCAGTATCAGATCCTTAAATTTCCTCTAACTACTGAGTCTGCAATGAAGAAGATTGAGGATAACAACACACTGGTTTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCAGATGGAACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAACAAAATTGGTATCATCTAA	552	0.4058	MGLCFNGLMQFSVIRICRGFSEVLVRVCNGSFKVDNAKKADPKAQALKTAKAVKSGGQVLKKKAKKIRTSVTFHRPKTLTKERNPKYPRISATPRNKLDQYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi29g00186	183	PANTHER	60S RIBOSOMAL PROTEIN L23A	35	183	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sebi29g00186	183	Gene3D	-	64	183	IPR012677	-
	Sebi29g00186	183	Pfam	Ribosomal protein L23, N-terminal domain	43	92	IPR005633	-
	Sebi29g00186	183	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	101	176	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Sebi29g00186	183	FunFam	60S ribosomal protein L23a	62	183	-	-
	Sebi29g00186	183	NCBIfam	50S ribosomal protein L23	107	183	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Sebi29g00186	183	Hamap	50S ribosomal protein L23 [rplW].	103	183	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sebi29g00186	183	ProSitePatterns	Ribosomal protein L23 signature.	161	176	IPR001014	GO:0019843
	Sebi29g00186	183	Pfam	Ribosomal protein L23	103	165	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi29g00186	Sebi-Chr29	2547125	2548256	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi29g00186	56	183	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	90.625	3.30e-68	203

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi29g00186	K02893		-	gmx:100777933	280.796