Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00167 ATGGATTTTTCTTCTTTGACCTCTCACTTGAGAAACTCGGCGAACTCGTTCCTCTCTCAATACGAACCCCTCGCTCTGCTTCTCGCTCCTCTCCTTTCTCTCCTTCTCGCCCACGCTCTTCGCTCCTTCTTCCACCACCTCCATCACAACGGACTCAAACCCACTCTCATAGGGTTCTTCATGAACTCTATCAAATTGATCCCTGGTGTCAAGAGTTACATAGATGCTGAAAAACGGAAGGTTGTGGATAAGTTGCAGTCTGATAGTAAATCTAAGAGAGAAGGTTGGAAAACACAGTTGCCAAGCACAGGATTAGGGACATCTGTCCTTGTGAAGATGAGAGAGGAGAAAAGAAATGATGCAATTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGGCATTTTTCTCTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAAGACTTCTGGAGGACAAATATGTGGCAACATGACATCTGGAGGGACTGAAAGTATATTATTAGCTGTTAAATCATCTCGTGACTACATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCTGTGTCTGCACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTTTGGCGTGTTCCAGTTAACAAAAATTTTCAAGCAGATGTGAAAGCAATTAGGCGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATTGAGGAACTTGGTCACCTAGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCTGTGGATGTGCATAAGTATGGTTTAGCTCCCAAAGGAACAAGCATAGTTCTATACAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCCGTTGCTGAATGGTCCGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGCCTAATTGCTGGTGCATGGGCAGCAATGATGTCCCTAGGCAAAGAAGGTTACTTGGAAAATACAAAAGCAATTATGGAAGGATCAAAAAGAATGCAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATCGTTGGAAGACCCGATATGACTATCGTGGCTTTTGGATCTGATGTTCTGGATATATTTGAAGTCAATGATATTATGTCATCCAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAGCATGTACCAGTTGTTGAAGACTTCCTAAGGGATTTAAAGGAATCTGTGAAAACTGTGAAAGAAAATCCCGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTTTATGGACGGTACCTGCTAG 1617 0.4292 MDFSSLTSHLRNSANSFLSQYEPLALLLAPLLSLLLAHALRSFFHHLHHNGLKPTLIGFFMNSIKLIPGVKSYIDAEKRKVVDKLQSDSKSKREGWKTQLPSTGLGTSVLVKMREEKRNDAIWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVAEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLENTKAIMEGSKRMQKGIEEIAELFIVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVVEDFLRDLKESVKTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00167 538 Gene3D Aspartate Aminotransferase, domain 1 107 501 IPR015422 GO:0003824
Sebi29g00167 538 FunFam sphingosine-1-phosphate lyase 1 138 402 - -
Sebi29g00167 538 Gene3D - 98 535 - -
Sebi29g00167 538 FunFam Sphingosine-1-phosphate lyase 1 498 537 - -
Sebi29g00167 538 FunFam Sphingosine-1-phosphate lyase 1 391 501 - -
Sebi29g00167 538 Gene3D - 135 402 IPR015421 GO:0003824
Sebi29g00167 538 SUPERFAMILY PLP-dependent transferases 74 501 IPR015424 -
Sebi29g00167 538 PANTHER - 37 538 - -
Sebi29g00167 538 Pfam Pyridoxal-dependent decarboxylase conserved domain 153 443 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00167 Sebi-Chr29 2314638 2321635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00167 154 496 Calmodulin-binding Proteins AT5G17330 25.000 8.62e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00167 K01634 - gmx:100794395 969.918