Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00162 ATGACAAGTTTTCAGCCTCACTGGTCATTTTTAACTTTGCTGATTTCAGTTTCCTATTTGCTGAATTGCTTAGGAAACAATGACATGCCTGTCCTATTGAATGATGATGTTCTTGGCCTTATTGTGTTTAAATCAGACCTTCATGACCCTTCTTCATATCTTGCTTCATGGAATGAAGATGATGTGAGTCCTTGTTCATGGCAGTTTGTGCAATGCAATCCTCAGAGTGGAAGAGTTTCAGAGGTCTCATTGGATGGCTTAGGATTATCTGGGAAGATTGGAAGAGGTCTTGAGAAGTTGCAGCATCTAACGGTATTGTCCCTTTCTCATAACAACTTGTCTGGGACTATTAGTCCTTCCCTTACTCTTTCTAATAGTCTTGAAAGGTTGAACCTTAGTCACAATGGTCTTTCTGGTCCTTTACCTACTTCTTTTGTCAACATGAGTTCAATAAGATTTCTTGATCTTTCAGAGAATTCATTCTCAGGACCAATCCCTGATAGTTTGTTTGAGAGTTGCTTTTCCCTTCATCACCTTTCTTTAGCTTGGAATAAGTTTGAAGGACCAATTCCTAGCACACTTTCTAGATGTTCCTCATTGAATAGTCTTAATCTTTCCTATAACCATTTCACTGGTAATGTGGACTTTATTGGGATTTGGTCATTGAACAGGCTTAGGAATTTGGATCTATCTAATAATGCCTTTTTTGGGAACTTACCTAATGGAATTTCATCCATACATAACTTGAAAGAGATCTTATTACAAAACAACCAGTTTTCAGGTCCATTACCTGTTGATATTGGACTTTGCCTGCATTTGAATAGGTTGGATTTTAGTAATAATCAGTTCACTGGAGAACTACCAGATTCACTTGGGGGGCTTAATGCTTTGAGCTATTTAAGGGCATCAAATAATGTTTTCAACAGTGAATTCCCTCAGTGGATTGGTAACATGACTAGTTTGGAATATCTAGAGCTCTCAAACAATCAATTCTATGGATTCATCCCACAATCAATAGGGGAACTGAGATCACTGACTTATCTGAGCATTTCAAATAACAAGCTTGTTGGGAATATTCCTTTGTCATTGGCTTACTGCACAAAGTTATCTGTGATCAGGCTCAGAGGGAATGGTCTCAATGGTACCATACCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAGTAGATTTTTCTCATAATGATCTTGTAGGTTCAATTCCAGCAGGCTCAAGCAGGCTCTTAGACACTCTCTCAAAGTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCTGCAGAAATGGGCCTTCTTTCAAAACTGAGATATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATTTCTCCAGAGTTTGGTTTCCTTCAGAATCTAACAGTTTTGGATCTTCGTAACAGTGCCTTGTATGGTTCTGTTCCAGCTGATATATGTGATTCAAGCAATTTGGCTGTCCTTCAACTTGATGGAAATTCATTGAAGGGACCTATTCCAGAAGAGATTGGGAATTGTACATCTCTTTACTTGCTGAGTTTGTCCCACAATAATTTGACTGGTTCAATCCCAAAGTCCATGTCAAAGCTAAACAAGCTCAAAATCCTCAAATTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAAAATCTTCTTGCTGTGAATATATCATATAACAGGCTCACAGGAAGGCTTCCAACTGGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTTGGTCTTTGCTCACCCTTGTTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCTTTAGTTCTTGACCCAAATGCCTATAACAACCAAATAGGTCCTCAAAGGCAAAGAAATGAATCATCTATATCTAGCCCAGATCATCACCACAAGTTCCTTAGTGTTTCAGCTCTTGTAGCAATTTCTGCATCCTTTGTCATCATATTAGGAGTGATTGCTGTTAGCCTACTCAATGTTTCTGTGAGGAGAAGGCTATCATTTGTGGACAATGCTTTGGAAAGCATGTGTTCAAGCTCTTCTAGATCAGGAGCTCCAGCCACAGGAAAGCTTATTCTGTTTGATTCCCAATCCTCACCTGATTGGATCAGCAGTCCAGAATCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACAGTTTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATCACCTCAAACATACTCCAATATCCAGAGGACTTTGATAGGGAAGTTAGAATCCTAGGCAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTATTAGTAGCTGAATATGCACCAAATGTGGAGTATGGAGAAGACAATGTGCTGATACTGAATGATCATGTAAGAGTGCTGCTTGAGCATGGAAATGTGTTGGATTGTGTGGATCCAAGCATGAGTGAGTACCCAGAAGATGAGGTATTGCCAGTTCTGAAGCTTGCAATGGTTTGCACCTCTCAAATACCTTCTAGCAGACCTACTATGGCTGAAGTGGTGCAAATACTTCAAGTCATCAAAACCCCAGTTCCTCAAAGAATGGAAGTGTTTTGA 2649 0.3986 MTSFQPHWSFLTLLISVSYLLNCLGNNDMPVLLNDDVLGLIVFKSDLHDPSSYLASWNEDDVSPCSWQFVQCNPQSGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGTISPSLTLSNSLERLNLSHNGLSGPLPTSFVNMSSIRFLDLSENSFSGPIPDSLFESCFSLHHLSLAWNKFEGPIPSTLSRCSSLNSLNLSYNHFTGNVDFIGIWSLNRLRNLDLSNNAFFGNLPNGISSIHNLKEILLQNNQFSGPLPVDIGLCLHLNRLDFSNNQFTGELPDSLGGLNALSYLRASNNVFNSEFPQWIGNMTSLEYLELSNNQFYGFIPQSIGELRSLTYLSISNNKLVGNIPLSLAYCTKLSVIRLRGNGLNGTIPEGLFGLGLEEVDFSHNDLVGSIPAGSSRLLDTLSKLDLSDNHLQGNIPAEMGLLSKLRYLNLSWNDLHSQISPEFGFLQNLTVLDLRNSALYGSVPADICDSSNLAVLQLDGNSLKGPIPEEIGNCTSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQNLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQIGPQRQRNESSISSPDHHHKFLSVSALVAISASFVIILGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGAPATGKLILFDSQSSPDWISSPESLLNKASEIGEGVFGTVYKVPLGSQGRMVAIKKLITSNILQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVAEYAPNVEYGEDNVLILNDHVRVLLEHGNVLDCVDPSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00162 882 Pfam Leucine Rich Repeat 440 462 IPR001611 GO:0005515
Sebi29g00162 882 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 194 288 - -
Sebi29g00162 882 SUPERFAMILY L domain-like 50 387 - -
Sebi29g00162 882 SUPERFAMILY L domain-like 317 589 - -
Sebi29g00162 882 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Sebi29g00162 882 ProSiteProfiles Protein kinase domain profile. 720 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00162 882 SMART LRR_typ_2 462 486 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 366 390 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 222 246 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 148 172 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 318 342 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 438 461 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 558 583 IPR003591 -
Sebi29g00162 882 SMART LRR_typ_2 100 125 IPR003591 -
Sebi29g00162 882 Gene3D Transferase(Phosphotransferase) domain 1 795 879 - -
Sebi29g00162 882 Gene3D Phosphorylase Kinase; domain 1 706 794 - -
Sebi29g00162 882 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Sebi29g00162 882 Gene3D Ribonuclease Inhibitor 341 610 IPR032675 -
Sebi29g00162 882 Gene3D Ribonuclease Inhibitor 37 147 IPR032675 -
Sebi29g00162 882 Gene3D Ribonuclease Inhibitor 218 271 IPR032675 -
Sebi29g00162 882 Gene3D Ribonuclease Inhibitor 148 217 IPR032675 -
Sebi29g00162 882 Gene3D Ribonuclease Inhibitor 272 340 IPR032675 -
Sebi29g00162 882 FunFam Inactive leucine-rich repeat receptor-like protein kinase 313 607 - -
Sebi29g00162 882 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Sebi29g00162 882 Pfam Leucine rich repeat 312 355 IPR001611 GO:0005515
Sebi29g00162 882 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515
Sebi29g00162 882 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Sebi29g00162 882 Pfam Protein kinase domain 722 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00162 882 SUPERFAMILY Protein kinase-like (PK-like) 720 875 IPR011009 -
Sebi29g00162 882 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 316 441 IPR046959 -
Sebi29g00162 882 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 193 - -
Sebi29g00162 882 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 714 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00162 Sebi-Chr29 2243338 2246650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00162 793 879 Receptor kinase-like Gene Family AT3G28040 72.727 7.40e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Sebi29g00162 Pkinase 7.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00162 - - gmx:100813764 1345.1