LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi29g00161	ATGGCCACCACTCCAGCTAGGTCTTTTCTCCAAGTAGCCGCAACGGAGGAGGCTGCACCCCCTCTTAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACCGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGACGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCTACATTGCTTGGTTCCTTTCAGACTGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGATTCATTCATGGAACTCTATCGGAGCAATAATTTTACTGGGGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTCATCAGTGCTTTTATGACAGAGCTTGAACCTGACAGCCCAGTCACCCAGTGTGATTATGATCGTCTGCAATTGTCGACCAGTTCATTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGTAGCTTGTCTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGTCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAAGATCCTTCAAACCCCATTTTCAAGCCACTCCCCGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGCAGAGCTTTAA	969	0.4458	MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDSPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGAEL	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi29g00161	322	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	20	321	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Sebi29g00161	322	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	23	126	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Sebi29g00161	322	ProSiteProfiles	MPN domain profile.	25	158	IPR037518	-
	Sebi29g00161	322	CDD	MPN_eIF3h	23	286	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Sebi29g00161	322	MobiDBLite	consensus disorder prediction	267	294	-	-
	Sebi29g00161	322	MobiDBLite	consensus disorder prediction	268	282	-	-
	Sebi29g00161	322	Gene3D	Cytidine Deaminase, domain 2	3	213	-	-
	Sebi29g00161	322	FunFam	Eukaryotic translation initiation factor 3 subunit H	4	213	-	-
	Sebi29g00161	322	SMART	pad1_6	24	157	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Sebi29g00161	322	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	17	319	-	-
	Sebi29g00161	322	Pfam	C-terminal region of eIF3h	144	318	IPR045810	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi29g00161	Sebi-Chr29	2234943	2238796	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi29g00161	88	320	Eukaryotic Initiation Factors Gene Family	AT1G10840	85.408	6.19e-148	414

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi29g00161	K03247		-	gmx:100814297	611.683