Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00156 ATGTGTGTGCAAGTTGTTCAAGATATGGAGAAAGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTTTGATATCTTGCATACCCAGATGGATAACAGGGAAAAAGGTTCTTCTTTTAGAACTCCCAGAGACCGGATCAGTGCTGAAAATTCGTTTCCTCTGGAAAGCATATGTGAGGATACAGAGATTGCAGAGAAAAAACAGAACCTGATAAACTTTGTTCCTACTCTTCGGTCTGGAGAATGGTCTGATATTGGAGGTCGCCCTTACATGGAGGATACCCACATATGCATTGGAGACTTGGCAAAGAAATTTGGTTATAATGTACTCTGCGAGGAATCTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGCGATCATCTACCAAGAGTGATTGTTGAGGATGCTGACTTCCCTCTGGAACTTGAGAAGGTGGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCCTTACTTGTAGCCAATGCTGGAGACTGCCGGGCTGTTTTGTCCCGTTCTGGAGTGGCCATAGAAATGTCAAAAGATCACAGGCCCTTGTGCATCAAAGAAAGAATGAGGATTGAGTCCATGGGTGGATTCATTGATGATGGTTACCTGAATGGACAGTTAGGTGTCACTCGTGCTCTAGGTGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGTGGTGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGACGAATTCTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCCGAAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAGACAGTGTTGTAAGGAAATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAATTTGACAGTTGTGATGGTATGCTTTCACTCAGATCCACCACCACCTCTGGTTGTAGAAAGGCCTAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACTTGCTACAAGGATAG 1131 0.4324 MCVQVVQDMEKVDNRRVSWPLHFDILHTQMDNREKGSSFRTPRDRISAENSFPLESICEDTEIAEKKQNLINFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVLCEESISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFAKTCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRSGVAIEMSKDHRPLCIKERMRIESMGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSGSGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVRQCCKEIIGEAIKRGATDNLTVVMVCFHSDPPPPLVVERPRVRRSISAEGLQNLKYLLQG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00156 376 CDD PP2Cc 78 343 IPR001932 -
Sebi29g00156 376 SUPERFAMILY PP2C-like 69 344 IPR036457 -
Sebi29g00156 376 FunFam Probable protein phosphatase 2C 22 61 346 - -
Sebi29g00156 376 PANTHER PROTEIN PHOSPHATASE 2C 65 341 IPR015655 GO:0004722|GO:0006470
Sebi29g00156 376 Gene3D - 59 346 IPR036457 -
Sebi29g00156 376 ProSiteProfiles PPM-type phosphatase domain profile. 78 343 IPR001932 -
Sebi29g00156 376 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Sebi29g00156 376 Pfam Protein phosphatase 2C 90 335 IPR001932 -
Sebi29g00156 376 SMART PP2C_4 68 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00156 Sebi-Chr29 2188392 2191103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00156 46 376 PP2C-type Phosphatase Gene Family AT2G25620 58.258 4.60e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Sebi29g00156 PP2C 3.3e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00156 K14803 - gmx:100782648 635.565