Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00150 ATGACTCAGGCAGTGGAGGTGCTGAATCGGTATGGAACGGATCTGGTAGGTGAAGCTAGGGGTTCAGATTCGGAGTGTTTGGCGGGTTTTGAGTGTTTCCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTAGTGGTGGTTCCCCTCCTCTTCTCCCTTATTCGCCTGATTCCAATTTGGACGGTGGGAAGAAAAGGAGGTTGAGGGGTTCAACTTCCTTTGATTATAAAGTGCCTGGGAGGATGTTCTTGAATGGGTCAAGCGAGGTTGCGTCCATGTACTGCAAGCAGGGTAGAAAAGGGATCAACCAAGATGCCATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAGGACACTATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAAGAAAGTTAGGGATTCTTTCCCTCTAAAGCTTAATGCACAATGGGATTTGCATCATAAGAATAAAGATGGACTCAGTGTCAGTGATGACAACAGTGCTGCTGGAAGTTATAATTCTGAAGGGCAATTTAAACTGGTTGATGAGAAACCTAGTCCTGTTGACCATGAGCTTGATGGAACAAATACTATTTTGACACTAAGAGAATCCTTTTTGAAGGCTTGTAAAATTATGGACAAAGAACTAAAACTGCATCCCGATATTGATTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAGCAGGGGCTGAATCTTGTTATTGGAAATGTGGGGGATTCAAGAGCTGTATTGGGTACCCGAGATCATGATGATTCTCTTATTGCGGTTCAGTTGACCATTGACCTTAAGCCAAATATTCCAAGGGAAGAAGAGAGGATCAGGCTTCGTAAAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAGGTGGCTCGAGTTTGGCTACCTAACTCTGATTTCCCAGGTCTAGCTATGGCACGGGCTTTTGGAGATTTTTGCCTGAAGGACTTTGGGTTGATTGCTGTTCCAGATGTCTCATATCACCGCCTTACTGAGAAGGATGAATTTGTTGTTTTAGCAACAGATGGGATTTGGGATGTTTTATCAAACGAAGAAGTTGTGGACATTGTGGCATCTGCTCCACGATCTACTGCTGCTCGAAAATTGGTTGAGTCGGCTGTTCAAGCATGGAGGACAAAATTCCCTTTTTGTAAGGTTGATGATTGTGCCGCAGTTTGCCTCTTCTTTGATTCAAATTCCGACTTAAAGTCCGCATGTAGCACAGACAAGTTGACACCAGAGGCATCAAATGACCAATATGAGCAGTCATCTCTACTTGGTGAGAAGGGAAATGAAGTGGAAGCTGAAAAGCACCAGCAATAG 1371 0.4449 MTQAVEVLNRYGTDLVGEARGSDSECLAGFECFLNIVRALGMGSCISEVGASGGSPPLLPYSPDSNLDGGKKRRLRGSTSFDYKVPGRMFLNGSSEVASMYCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKNKDGLSVSDDNSAAGSYNSEGQFKLVDEKPSPVDHELDGTNTILTLRESFLKACKIMDKELKLHPDIDCFCSGTTAVTLVKQGLNLVIGNVGDSRAVLGTRDHDDSLIAVQLTIDLKPNIPREEERIRLRKGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDVSYHRLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARKLVESAVQAWRTKFPFCKVDDCAAVCLFFDSNSDLKSACSTDKLTPEASNDQYEQSSLLGEKGNEVEAEKHQQ 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00150 456 ProSiteProfiles PPM-type phosphatase domain profile. 97 412 IPR001932 -
Sebi29g00150 456 FunFam probable protein phosphatase 2C 33 92 415 - -
Sebi29g00150 456 CDD PP2Cc 97 412 IPR001932 -
Sebi29g00150 456 MobiDBLite consensus disorder prediction 423 442 - -
Sebi29g00150 456 SMART PP2C_4 91 410 IPR001932 -
Sebi29g00150 456 Pfam Protein phosphatase 2C 204 390 IPR001932 -
Sebi29g00150 456 PANTHER PROTEIN PHOSPHATASE 95 410 IPR015655 GO:0004722|GO:0006470
Sebi29g00150 456 Gene3D - 92 421 IPR036457 -
Sebi29g00150 456 SUPERFAMILY PP2C-like 92 414 IPR036457 -
Sebi29g00150 456 MobiDBLite consensus disorder prediction 423 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00150 Sebi-Chr29 2145598 2149780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00150 70 416 PP2C-type Phosphatase Gene Family AT1G16220 59.384 3.38e-150 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00150 - - gmx:100802479 810.061