Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00144 ATGCCTCATGTTGGAGCTTTGGAGCTTCTGAGATTGATTAGTGGTTGTGGCTTTGTTTGTTCTGCTTTAATGTTTAAGAAAACACACACCCCTTCTTCTCTTGCAAGGGAATTTTTGGCATTCCAGCCACTTGTTCTTCTGTTCTTGTTTAGCTTGCACCATAACACTGTGCAATGCCAGGGAAGGTTGAGTAAACACATCTCTTCAGAACCTCCCTCACCTTCAAGGCTATTATCACCACCATCATCAGAATACAAGGATGACCCTAGGAAGATTATTGTCAGCATTGTCTTAGGAGCAGTTACTGGACTAGTTGGTTCTGTTCTCTTTGCATTTGTAGTTCGTTGTGTTGTTAAGTATCTGAACAGAACACCAATCCTCAAGGGTCCTGTCATATTCTCCCCAAAAATTGACCCCAAGACACTCCAATCAGCTTTGGCAAAAGAAAACCATTTGCTTGGTTCTAGTTCAAATGGGAAATACTACAAAACAGTACTTGACAATGGTCTCACTATTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCCCCTGAGGCTAGGAGAAAATCAGTGAAGAGGCAGATACAGATGGAGCTAGAGCTTCTTGCAAGCTTAAGACATAGGAACTTGATGAGCTTAAGGGCCTATGTTCGTGAACCTGATGGGTTCTCATTGGTTTATGATTATGTATCCACAGGGAGTCTTGCAGATGTAATGAATAGAGTGAGGGAAAATGAGTTGCAGCTTGGTTGGGAGGTTAGGCTAAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGTGCCTCAGATTCTGCACTTCAACTTGAAGCCCACAAATGTGATGTTGGATGCAGAGTTTGAACCCAGATTGGCAGATTATGGATTGGCTAAACTTCTTCCCAACTTGGATAGAGGGACATCTGTCAACAGCCCTCCTGAATGTTTCCATAATTGCAGGTACACAGACAAAAGTGACATCTTCAGTTTTGGCATGATATTAGGTGTTTTATTAACCGGTAAGGACCCTACTGATCCATTCTTTGGAGAAGCAGCCAGTGGGGGAAGTTTGGGATGTTGGCTGAGGCACTTGCAACAAGCAGGTGAGGCAAGGGAAGCTCTAGATAAGAGTATTTTGGGGGAAGAAGGGGAAGAAGATGAGATGTTAATGGCTGTAAGGATTGCTGCTGCATGCCTTTCTGATATGCCTGCAGATAGGCCTTCCAGTGATGAACTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1287 0.4359 MPHVGALELLRLISGCGFVCSALMFKKTHTPSSLAREFLAFQPLVLLFLFSLHHNTVQCQGRLSKHISSEPPSPSRLLSPPSSEYKDDPRKIIVSIVLGAVTGLVGSVLFAFVVRCVVKYLNRTPILKGPVIFSPKIDPKTLQSALAKENHLLGSSSNGKYYKTVLDNGLTIAVKRLTPFESNSPEARRKSVKRQIQMELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVMNRVRENELQLGWEVRLRIAVGVVKGLQYLHFTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGTSVNSPPECFHNCRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGCWLRHLQQAGEAREALDKSILGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00144 428 Gene3D Transferase(Phosphotransferase) domain 1 231 427 - -
Sebi29g00144 428 Pfam Protein kinase domain 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00144 428 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 139 230 - -
Sebi29g00144 428 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 52 424 - -
Sebi29g00144 428 MobiDBLite consensus disorder prediction 63 85 - -
Sebi29g00144 428 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 231 427 - -
Sebi29g00144 428 ProSiteProfiles Protein kinase domain profile. 147 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00144 428 Gene3D Phosphorylase Kinase; domain 1 133 230 - -
Sebi29g00144 428 SUPERFAMILY Protein kinase-like (PK-like) 150 422 IPR011009 -
Sebi29g00144 428 CDD STKc_IRAK 153 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00144 Sebi-Chr29 1996939 1999113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00144 57 425 Receptor kinase-like Gene Family AT2G31880 31.630 7.83e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Sebi29g00144 Pkinase 4.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00144 - - gmx:102664172 702.975