Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00143 ATGCAATTCGCAAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAGTTTTACAAAGGATGTAGAAAATACACCGAAGGACTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGTGGGCATAATGATCCCATTAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTTACCATAGCCTTAAGAGAAATTGGAACATACAAGGAAGTTCTTCGATCACAGGTTGAGCATATGTTGAATGACAGATTGCTTCAGTTTGTCAATATTGATCTGCAAGAGGTCAAGGAGGCACGGAAACGCTTTGACAAGGCTAGTCTTATTTATGACCAGACTCGTGAAAAGTTTTTGTCCCTGAGAAAAGGCACAAAAAGTGATGTAGCTGCTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTATCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGACGCACATCTTCGTTACTTCAAACAGGGGTATGAATTATTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCGAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGAGAGAGTAGGTGGGCTTCAAATGGTTCAAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGGCAAGGTTATCTCTCAAAGCGTTCGTCAAATTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGAGGAATGTTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGCCAACATTCTGGTCAGCGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTCGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCGCCAACAAAGAACTATACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCCGAAAGGTTGTTACCTGCCAGTCCAATGGGAAGTGGTGATAATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACTACTATTGAAGAATTTGCAGCTGATAGAAGTCTTGCTTCTGCGCATCTGGAGCGCCCCTCAAGAAGTTTGCACCAGCAACGATCCTGTATTAAAAATGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCTCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTGAGGTCTCTGACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTATGGGAGGAACTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCTCCACAGGCTTAAGCAAGTCCGATAAACAACTGATGCTTTTCATCACCAAACCTTGTCAATCTGATTCTCTCTCTGTCAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAACCAAAGGACAGTCAATACCGTCTCCTGGTGGCACAACAGATTTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTCTACCGCTACATTGTTAATTCTGACATTGACGTTAATCTTGTTTATGAGCAAATGTGTAGCAACTCTTTAACTCTTGCCAAAGTAATGTTATTACAAGAGCAGACAAGCCATGATCACAGCTCTACTTTAGCAGGGAACACATTGGACTGGTCCTCTAATAGCTCTTTGAATTCGGTGGGTACGAAAGAAGGCCAGGCTATGGATTATCTAGATGGGTGCACACTACTTCACCTCGCTTGTGAAACTGCGGATATTGGCATGCTGGAGCTCCTCCTACAATATGGTGCAAATATTAATGCAACTGATTTGAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGCAAATCTACATTTGCGAGATTACTGCTTTCAAGGGGAGCCGATCCTCAAGCTGTGGATGAGCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGACAGAGAAGTCCATGCTGATTCTAATGGATGA 2484 0.4275 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSDVAAALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGDNRSTSESSSFESSDFDHTTIEEFAADRSLASAHLERPSRSLHQQRSCIKNEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVSTGLSKSDKQLMLFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKAVYRYIVNSDIDVNLVYEQMCSNSLTLAKVMLLQEQTSHDHSSTLAGNTLDWSSNSSLNSVGTKEGQAMDYLDGCTLLHLACETADIGMLELLLQYGANINATDLRGQTPLHRCILKGKSTFARLLLSRGADPQAVDEQGRTPIELAAESNADDREVHADSNG 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00143 827 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Sebi29g00143 827 Gene3D - 285 437 IPR011993 -
Sebi29g00143 827 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Sebi29g00143 827 Pfam Ankyrin repeats (many copies) 757 811 IPR002110 GO:0005515
Sebi29g00143 827 CDD ArfGap 503 632 - -
Sebi29g00143 827 SUPERFAMILY Ankyrin repeat 666 816 IPR036770 -
Sebi29g00143 827 MobiDBLite consensus disorder prediction 253 269 - -
Sebi29g00143 827 Pfam Putative GTPase activating protein for Arf 503 640 IPR001164 GO:0005096
Sebi29g00143 827 Gene3D - 645 819 IPR036770 -
Sebi29g00143 827 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Sebi29g00143 827 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Sebi29g00143 827 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Sebi29g00143 827 Coils Coil 151 171 - -
Sebi29g00143 827 ProSiteProfiles Ankyrin repeat region circular profile. 770 802 - -
Sebi29g00143 827 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Sebi29g00143 827 ProSiteProfiles Ankyrin repeat region circular profile. 737 768 - -
Sebi29g00143 827 SUPERFAMILY ArfGap/RecO-like zinc finger 499 640 IPR037278 -
Sebi29g00143 827 SUPERFAMILY PH domain-like 293 443 - -
Sebi29g00143 827 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Sebi29g00143 827 CDD BAR_SFC_plant 14 215 IPR035670 -
Sebi29g00143 827 PANTHER CENTAURIN/ARF 3 823 IPR045258 GO:0005096
Sebi29g00143 827 Gene3D Arf GTPase activating protein 481 644 IPR038508 -
Sebi29g00143 827 SMART ANK_2a 770 799 IPR002110 GO:0005515
Sebi29g00143 827 SMART ANK_2a 737 766 IPR002110 GO:0005515
Sebi29g00143 827 Coils Coil 227 247 - -
Sebi29g00143 827 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Sebi29g00143 827 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Sebi29g00143 827 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Sebi29g00143 827 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Sebi29g00143 827 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 646 - -
Sebi29g00143 827 Pfam PH domain 294 427 IPR001849 -
Sebi29g00143 827 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Sebi29g00143 827 MobiDBLite consensus disorder prediction 446 463 - -
Sebi29g00143 827 CDD PH_ACAP 295 432 - -
Sebi29g00143 827 MobiDBLite consensus disorder prediction 439 463 - -
Sebi29g00143 827 SMART PH_update 293 430 IPR001849 -
Sebi29g00143 827 MobiDBLite consensus disorder prediction 248 270 - -
Sebi29g00143 827 ProSiteProfiles Ankyrin repeat profile. 770 802 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00143 Sebi-Chr29 1982916 1992537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00143 512 639 C2H2 Transcription Factor Family AT4G21160 38.760 4.92e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00143 K12489 - gmx:100789134 1484.16