Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00139 ATGGATCTCCCTTTAATTTGCATATATGTGTTGGTACTAATTAAAGAGGTGAGAAAGAAAGCACACTACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTCGTGATCCAAAGAAAGCAGCAAGAGTGTGGCTTGGAACCTTTGGCACAGCTGAGGATGCAGCCATTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTCAAAGAGTTCAACTTCAAGCTCAAGGGAACACTACTAATCTTGTTGGTTATAGTGATAGTGCCATTCAACAAAGTTGTGTTGATGATGTTGCCCTTCCACCTCCATCATTCTCCACACAACAACAACAACAAGTTTTCCCAGATCTGTTTCAGTATGCACAGATTCTTTCAAGTGATGATGCACAATTCCCTTATTACACATCCAATCTTTTCAATCAACAACAACCTTTCACTTCACAATCTTCTTCTTCCTCCTCACCCAATAACTTCTACAATCAGCAACAACATTATGAAGAAGAAGAAGGACATCATCGATACCCAGACCAGTAA 567 0.4056 MDLPLICIYVLVLIKEVRKKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFGTAEDAAIAYDKAALKFKGTKAKLNFPQRVQLQAQGNTTNLVGYSDSAIQQSCVDDVALPPPSFSTQQQQQVFPDLFQYAQILSSDDAQFPYYTSNLFNQQQPFTSQSSSSSSPNNFYNQQQHYEEEEGHHRYPDQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00139 188 PANTHER DNA-BINDING DOMAIN 19 158 IPR044808 GO:0003700|GO:0009873
Sebi29g00139 188 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Sebi29g00139 188 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Sebi29g00139 188 MobiDBLite consensus disorder prediction 154 174 - -
Sebi29g00139 188 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Sebi29g00139 188 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Sebi29g00139 188 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Sebi29g00139 188 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Sebi29g00139 188 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Sebi29g00139 188 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Sebi29g00139 188 MobiDBLite consensus disorder prediction 154 188 - -
Sebi29g00139 188 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00139 Sebi-Chr29 1938741 1939307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00139 19 150 AP2-EREBP Transcription Factor Family AT5G13330 53.623 2.65e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi29g00139 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00139 - - vun:114185501 172.94