Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00128 ATGGGAAGGAAAAAGACAGAGGATACAGGCCTATCTGCAAAGGCTAAGGCAAGTAGCAAAGATGCTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAGGTCTCTTCTTCCTCCAATAATAAGCCCAAGCCAAAATCTGCTCCAAAAGTTACTACATACACTGATGAACTTCTGAAGAATACATCAATGAGGATATCTCATGGGAAGCGATATGGTTTGGTTGGTCCCAATGGAAAGGGAAAGTCAACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATTGATGTCCTTCTGGTTGAGCAGGAAGTTGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGATGAACTTGTTAAAATTCGACAAGAAGTTTCTGCTCTACAGAATGTATCTTCTGTTGAAGAAAGTGTAGATAAAGATAATAACTATGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTGTATGAAAAATTACAGCTGATGGGGTCTGATGCTGCTGAAGCTCAGGCATCAAAGATTTTAGCTGGTTTAGGGTTTACAAAAGATATGCAGGGCCGTCCTACTAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCGTTAGCTCGAGCACTTTTTGTGCAGCCAACTCTATTATTGCTTGATGAACCTACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGCCGTTGGAAGAAAACTTTGGTGGTTGTCTCACATGACAGGGACTTCCTCAATACAGTGAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAGCAAAGGTAAGGGAAAGGTTGATGAGGATGAGGCCCCACCAGAGGTACCACAGAAGTGGAGGGACTACAGTGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTCCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGGGAGGATTTTAGACTTTCAAGTGTTGATGTTGGAATTGATATGGGGACTCGTGTTGCTATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTGGCTGGTGATCTGGTTCCAACTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACTTACTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTTCACCCAGACCAGGAAGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTACTCCTATTGTCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTGTTCACGTCTATATCCATGTCAAAACCACACATTTTATTGTTAGATGAACCCACAAATCATTTGGATATGCAAAGTATTGATGCATTGGCTGATGCACTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCATGATTCTAGATTGATATCACGTGTTTGTGAGGATGAAGAAAGGAGTCAAATATGGGTTGTTGAGGATGGTACTGTCAGAACTTTCCCTGGAACATTTGAGGACTACAAGGAGGATCTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTAA 1674 0.4265 MGRKKTEDTGLSAKAKASSKDASKKEKFSVSAMLASMDEKPDKPKKVSSSSNNKPKPKSAPKVTTYTDELLKNTSMRISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVSALQNVSSVEESVDKDNNYEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVKDRAKFAAAKEASKSKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSSVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTFPGTFEDYKEDLLREIKAEVDD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00128 557 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 283 550 - -
Sebi29g00128 557 Gene3D - 57 299 IPR027417 -
Sebi29g00128 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 279 IPR027417 -
Sebi29g00128 557 Gene3D - 300 556 IPR027417 -
Sebi29g00128 557 CDD ABCF_EF-3 330 532 - -
Sebi29g00128 557 FunFam Putative ABC transporter ATP-binding component 58 294 - -
Sebi29g00128 557 MobiDBLite consensus disorder prediction 1 66 - -
Sebi29g00128 557 Coils Coil 132 152 - -
Sebi29g00128 557 SMART AAA_5 80 287 IPR003593 GO:0016887
Sebi29g00128 557 SMART AAA_5 356 532 IPR003593 GO:0016887
Sebi29g00128 557 MobiDBLite consensus disorder prediction 50 66 - -
Sebi29g00128 557 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 310 IPR003439 GO:0005524
Sebi29g00128 557 CDD ABCF_EF-3 65 279 - -
Sebi29g00128 557 Pfam ABC transporter 347 482 IPR003439 GO:0005524
Sebi29g00128 557 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524|GO:0016887
Sebi29g00128 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 543 IPR027417 -
Sebi29g00128 557 FunFam ABC transporter F family member 4 295 557 - -
Sebi29g00128 557 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 330 555 IPR003439 GO:0005524
Sebi29g00128 557 Pfam ABC transporter 71 242 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00128 Sebi-Chr29 1766702 1768894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00128 330 533 Calmodulin-binding Proteins AT2G36910 28.251 1.29e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00128 K06184 - ppp:112278267 712.605