Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00102 ATGGCTATAAAAGATTCTCTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGTGATGCAGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTAGTGAAAACTTGGTCATTGGCTTGGGCACTCCAAGTCAAAGTTTGTCTGGTACTCTATCTTCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGTTGCTACAGAATAACAACATAAGTGGACCAATCCCTTTAGAGCTAGGCAAACTTCCTAGGCTTCAAACACTTGATCTCTCTAATAACTTCTTCAGTGGGGAAATTCCTTCCACTCTTGGTCACCTGAGAAGCCTTCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGTCCAGAATCACTGGCTAACATGACACAGCTTGCTTTTCTTGATTTGTCTTACAACAATCTTAATGGTCCTGTGCCCAGAATTTTGGCCAAATCATTCAGCATTATTGGCAACCCCCTTATTTGTGCTACTGGAAAAGAACCAAACTGCCATGGGATGACACTGATGCCCATGTCCATGAACTTAAACAATACTGAAGATGCTTTACCATCAGGCAGACCAAAAACTCATAAAATGGCCATTGCCTTTGGCTTGAGTCTGGGATGTCTCTGTCTGATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTTAAAGGTAAGCCAGTCCTAGACTGGGGCACAAGGAAGAATATTGCTTTGGGAGCAGCAAGGGGATTACTTTACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCCAACATATTGCTTGATGACTATTGTGAAGCAGTAGTTGGAGATTTTGGATTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACTGTGGGGCATATTGCCCCAGAATATCTATCCACAGGACAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAATTAATCACAGGCCTGAGAGCCTTAGAATTTGGAAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTTGAATTGCTTGTAGACAAGGATCTCAAGAGTAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATACCTTCCAGGCCACAGACCTAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGGTTAGCAGAAAGATGGGAAGCTTCTCAAAGAGCTGACACAACCAAGTGCAAACCTCCCCATGAGTCCTCTTCATCAGATAGGTATTCTGATCTTACTGATGACTCTTTATTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGGTGA 1422 0.4283 MAIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSSSIGNLTNLQIVLLQNNNISGPIPLELGKLPRLQTLDLSNNFFSGEIPSTLGHLRSLQYLRLNNNSLVGECPESLANMTQLAFLDLSYNNLNGPVPRILAKSFSIIGNPLICATGKEPNCHGMTLMPMSMNLNNTEDALPSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTTKCKPPHESSSSDRYSDLTDDSLLLVQAMELSGPR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00102 473 Pfam Leucine rich repeat 84 144 IPR001611 GO:0005515
Sebi29g00102 473 MobiDBLite consensus disorder prediction 432 457 - -
Sebi29g00102 473 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 432 - -
Sebi29g00102 473 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 175 - -
Sebi29g00102 473 MobiDBLite consensus disorder prediction 432 453 - -
Sebi29g00102 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Sebi29g00102 473 Gene3D Transferase(Phosphotransferase) domain 1 226 441 - -
Sebi29g00102 473 SMART serkin_6 212 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00102 473 Pfam Leucine rich repeat N-terminal domain 2 33 IPR013210 -
Sebi29g00102 473 Pfam Protein kinase domain 244 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00102 473 SUPERFAMILY Protein kinase-like (PK-like) 238 427 IPR011009 -
Sebi29g00102 473 SUPERFAMILY L domain-like 2 158 - -
Sebi29g00102 473 ProSiteProfiles Protein kinase domain profile. 33 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00102 473 FunFam Somatic embryogenesis receptor-like kinase 1 231 441 - -
Sebi29g00102 473 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00102 Sebi-Chr29 1506665 1509673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00102 223 473 Receptor kinase-like Gene Family AT5G16000 82.031 1.53e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Sebi29g00102 Pkinase 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00102 - - gmx:100797768 446.432