Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00070 ATGGAGGTTGTTTTGGCATCTTCCTCTGTTGATGGTGGGATAGGTTGCTGGGACCTTAAGACGGGCGCTGAGCAGCTCCGCTACAAATCATGTTCCTCCCCTTCTCATGGTCTTGTCTCTGTTGGTGCTCACTTCCTTGCATCTTCTCAGCTCCGAGACCCTTCAGCTTCCTCTGGTTCTGTTTTCTACTGGTCCTGGTCCAAGCCTCAAGTTGAAGTTAAGAGCTTTCCTGCTGAACCCATTAAGCCCCTTGCTGCTAATCACACAGGAACCTATCTAGCTGGTGGAGCTTTGTCAGGTGATATATACTTGTGGGAGGTTGAAACTGGCAGATTGCTTAAGAAGTGGCATGGTCATTATAGGGCTGTTACTTGCCTGGTATTTTCTGAAGATGACTCACTGCTGATATCTGGTTCTGAAGATGGATCCGTGAGAGTTTGGTCTCTCTTCATGATAGTTGATGATTTGAGAAGTCAGGAAGCAAAAAATCTTTATGAGTATAGTTTTTCAGAGCACACACTGCGTGTTACTGATGTTGTGATTGGTTATGGAGGGTGCAACGCAATTATAGTGTCAGCTTCAGAGGATCGGACCTGTAAGGTATGGAGCTTATCTAGGGGAACACTACTTAGAAATATTGTATTCCCTTCAATAATTGATGCTATTGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGAAGCAGAGATGGAAAAATATTTATTGCTGCACTTAACACTGAAAGCATTGCTGCTAATAGTTATGGAATGCATATCATTGGTTCATTTTCCAACCACAGCAAGGCAGTTACTTGCTTAGCATATGGCATAGGTGAGAATTTGTTAATATCCGGGTCAGAGGATGGAATGGTTCGTGTTTGGAATGCGAGAACACGTAACATTGTCCGTATGTTTAAACATGCTAAAGGACCTGTAAATAATATCCTCGTTGTTAGACAAGAAATTGACTTAAGTTATGGTGCATCTTCTAATGTACAAGCATCCTCAAAGAAGCAGGGGTATTATTTACCCCCTCCATTGGAAAAATATGAAAATTCAATAGACGAAGATTCAGATATAAAGACTGTTATCAGCCTCAAGGGTGGTATGAGAGGCACGGATGTTTCATACCTCAGTTCTCATGTGATATCCAATTACATTAAGGAACTTCAGCATCAAGGTTCATCTGCTTCTTCTGAATTGGAGATGGAGAAACTAAAACATGATTGCCAAAGGTCCATGCAGATGGTTGACCAATGGAAGAAAATGTATGAAAACTTGCATCAATTTTGTGTGAAGGAGCTGTTGGATGGTGGTCAAGCAAGAACCTTAGATGAAAATGATAAGTGA 1350 0.417 MEVVLASSSVDGGIGCWDLKTGAEQLRYKSCSSPSHGLVSVGAHFLASSQLRDPSASSGSVFYWSWSKPQVEVKSFPAEPIKPLAANHTGTYLAGGALSGDIYLWEVETGRLLKKWHGHYRAVTCLVFSEDDSLLISGSEDGSVRVWSLFMIVDDLRSQEAKNLYEYSFSEHTLRVTDVVIGYGGCNAIIVSASEDRTCKVWSLSRGTLLRNIVFPSIIDAIALDPAEHVFYAGSRDGKIFIAALNTESIAANSYGMHIIGSFSNHSKAVTCLAYGIGENLLISGSEDGMVRVWNARTRNIVRMFKHAKGPVNNILVVRQEIDLSYGASSNVQASSKKQGYYLPPPLEKYENSIDEDSDIKTVISLKGGMRGTDVSYLSSHVISNYIKELQHQGSSASSELEMEKLKHDCQRSMQMVDQWKKMYENLHQFCVKELLDGGQARTLDENDK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00070 449 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Sebi29g00070 449 Pfam WD domain, G-beta repeat 168 203 IPR001680 GO:0005515
Sebi29g00070 449 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Sebi29g00070 449 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Sebi29g00070 449 Gene3D - 216 324 IPR015943 GO:0005515
Sebi29g00070 449 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 312 IPR011047 -
Sebi29g00070 449 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Sebi29g00070 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Sebi29g00070 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Sebi29g00070 449 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Sebi29g00070 449 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Sebi29g00070 449 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Sebi29g00070 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Sebi29g00070 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Sebi29g00070 449 PANTHER WD-REPEAT PROTEIN 18 2 436 IPR045227 -
Sebi29g00070 449 Gene3D - 1 215 IPR015943 GO:0005515
Sebi29g00070 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Sebi29g00070 449 SMART WD40_4 162 203 IPR001680 GO:0005515
Sebi29g00070 449 SMART WD40_4 256 295 IPR001680 GO:0005515
Sebi29g00070 449 SMART WD40_4 109 148 IPR001680 GO:0005515
Sebi29g00070 449 SMART WD40_4 206 244 IPR001680 GO:0005515
Sebi29g00070 449 SMART WD40_4 69 106 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00070 Sebi-Chr29 884929 888831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00070 88 305 U-box Gene Family AT1G04510 24.324 1.04e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00070 K14829 - gmx:100791195 759.214