Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00067 ATGGGTTCTGTTTGTTCTTGTTTGAGTGTTGATGATTTTGAAGATTATATGAATCCAAATAGTCATGTATATAGGAACTGTGTGTGTCTTGGCTGCTTCGTGCAGAACTTCTTGAATGTGTATGCATCAATATTCCGTAGAGGGGAAATGCATTCGATTCCTTCATCTATACAAGGAGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCTCTTTCTGACATGTACCGTTCTCCTCCGAGGCCCTTGCCTTATGATGCAGACCCCAGGTATTTCCGCTCACAGCATGATGGGTTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAAGAAGTGACGCAGATGTGGACCCAGAATCTTTAAATTCAGGTGGTAAGTGGAATGGAAGTACTGGCGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCAGTCAGACTTTCATCTGCAAAACTTACAACTGGAACCGATCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGGAAGAGTGCAAACCATTATAAACCTGGCTTGGACCTGCTGGTTCCAGTAGAAACTGGAAATCAGCTCCAATTCTACCAGTCCCTATGGCTGTGTGTGCTGGCATGTATTTGCTCAGTTTGA 774 0.4264 MGSVCSCLSVDDFEDYMNPNSHVYRNCVCLGCFVQNFLNVYASIFRRGEMHSIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFRSQHDGLVSRREKGSSHLNEESEPLRSDADVDPESLNSGGKWNGSTGEDGSKEYRSKSSVRLSSAKLTTGTDLVYASSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKSANHYKPGLDLLVPVETGNQLQFYQSLWLCVLACICSV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00067 257 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Sebi29g00067 257 SMART ring_2 177 217 IPR001841 -
Sebi29g00067 257 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 221 - -
Sebi29g00067 257 MobiDBLite consensus disorder prediction 99 123 - -
Sebi29g00067 257 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Sebi29g00067 257 CDD RING-H2_AIRP1-like 173 219 - -
Sebi29g00067 257 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Sebi29g00067 257 MobiDBLite consensus disorder prediction 99 154 - -
Sebi29g00067 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Sebi29g00067 257 SUPERFAMILY RING/U-box 172 224 - -
Sebi29g00067 257 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00067 Sebi-Chr29 830017 831783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00067 1 219 C3H Transcription Factor Family AT5G15790 61.607 2.21e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00067 - - gmx:100788192 409.068