Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00061 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTCTAGCACCTCTAAGTATGCACTCTGCATCTATCTCTGTTTATGA 216 0.4213 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSKYALCIYLCL 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00061 71 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi29g00061 71 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Sebi29g00061 71 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Sebi29g00061 71 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi29g00061 71 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi29g00061 71 FunFam MADS-box transcription factor MADS-MC 13 68 - -
Sebi29g00061 71 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi29g00061 71 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi29g00061 71 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi29g00061 71 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Sebi29g00061 71 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Sebi29g00061 71 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00061 Sebi-Chr29 783410 783625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00061 1 68 MADS-box Gene Family AT1G24260 82.667 1.45e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi29g00061 SRF-TF 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00061 K09264 - oeu:111372629 123.635