Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00058 ATGATGGGTTCTCTAGCAGCAGAGAAACTAGTGTTGAGGAAAGGGCCTTGGACTCATGAAGAGGACGAGTTGCTTATTGAATATGTCAGTTTGCATGGAGAGGGAAGGTGGAGCTCCGTGGCCAAGCTCACAGGGTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTAAATTATTTGAGACCGGGCCTGAAGAAAGGTCAATTAACCCCTCTAGAAGAAGGAATCATTATTGAACTTCATGCTGTTCTGGGAAACAAGTGGTCTACAATAGCAAAGTACTTGCCGGGTAGAACTGATAACGAGATAAAGAACTACTGGAGAACCCACTTCGGGAAGAGAGAGAAAGCTAACAATAATAATAACAAGTTTGAAAGCAGGCGAAGAACGAAAGTGCTAAAGCAGTTGAAATTACAACAAGAGCAGAAACACGACATCAAAAGCATGTCGTCTCATGAGGAGACCAAAAATGAAACAAGAAGAAATATATCTCCTGAGGCTGAGACACACACACAAGGCATGGATTACCAATTGAACCTCCCTTCAATAATGCATCATCAAGAGTTCTCCTCATCCACGTGGCCAGATGATCAAGACCTATGGTTTAGTTTGTGGGAGTTTGATGAACCATCGCAAGGTCTTGCCATGCCAAGTCAAGATAGCTTTGGAAATGGGGGGGAATATTTCATGCAAAACTTCTCATTTTGA 711 0.429 MMGSLAAEKLVLRKGPWTHEEDELLIEYVSLHGEGRWSSVAKLTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEGIIIELHAVLGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKANNNNNKFESRRRTKVLKQLKLQQEQKHDIKSMSSHEETKNETRRNISPEAETHTQGMDYQLNLPSIMHHQEFSSSTWPDDQDLWFSLWEFDEPSQGLAMPSQDSFGNGGEYFMQNFSF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00058 236 Gene3D - 11 67 - -
Sebi29g00058 236 MobiDBLite consensus disorder prediction 136 166 - -
Sebi29g00058 236 Gene3D - 69 169 - -
Sebi29g00058 236 CDD SANT 16 61 IPR001005 -
Sebi29g00058 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 65 IPR017930 -
Sebi29g00058 236 MobiDBLite consensus disorder prediction 136 169 - -
Sebi29g00058 236 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 207 - -
Sebi29g00058 236 SMART sant 66 114 IPR001005 -
Sebi29g00058 236 SMART sant 13 63 IPR001005 -
Sebi29g00058 236 FunFam Myb transcription factor 14 66 - -
Sebi29g00058 236 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi29g00058 236 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Sebi29g00058 236 CDD SANT 71 112 IPR001005 -
Sebi29g00058 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sebi29g00058 236 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi29g00058 236 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi29g00058 236 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00058 Sebi-Chr29 759926 761020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00058 12 210 MYB Transcription Factor Family AT3G30210 52.475 3.27e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi29g00058 Myb_DNA-binding 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00058 K09422 - gmx:100785540 281.952