Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00039 ATGAATAGTGAACATGCACAAGCATCTGAAGGGTTCAAGAAGGAAATTGAGTTACTCTGCCAGCTTCATCACCCTAATTTGATCTCTCTCATAGGATTCTGTAACCACAAAAATGAGAAGATTATCGTGTACGAGTATATGTCGAATGGATCTCTCTATGATCACATATTCAATAGGGAGAAGGAATTACCACTGTCATGGAAGAAAAGGTTAGAGATCTGCATAGGAGCTGCACGTGGGGTGCACTACCTCCACACAGGAGCGAGACGCACCATCGTTCACCGTGACATCAAACCCAGCAATATTCTTTTGGATAGCAACATGGTGGCTAAGATATCAGATTTTGGGCTTTCATTGCTAGGAGCGCTGGCTACTTCAAAACCAAAACCTATTGCAAAAGGAATTATTGCAGGTACAATGGGTTTCTTGGCTCCTGAGGTTTTCTTGGATACCTGTGTCGGCTGGACAGATCGATACGACGTTTACTCCTTTGGAATGGTTCTATTAGAAGTGATATGTGCAAAGCCATGTTGGGATATTATAGAGGAGATGATGGGTCCTGGTGCTAAGATACAGATCTCAAGTGACGACGAATCAGAAAGTTTTCGTCATTATGTCATTTCAAGGCTTCGAGCTGAGGAGATTATTGATCCGGCTCTCACAGGAAAAATTGCACCAGAATGTAAGGAAGTATTCATAGATATCATAGTCGACTGCCTCAAGTATGAACCAAATGAACGGCCAACAATGGGTGAAGTGGAGATGGAACTTGAGCGTGCTCTTACTTTGCAACTGGAAGCAGACGCCAGGAATACTAGTGGCCATCATTATAGCTTATCATCCACCACCATTACTCAACAACAAGAGGCGCCAATTGCAGTCTAA 885 0.4316 MNSEHAQASEGFKKEIELLCQLHHPNLISLIGFCNHKNEKIIVYEYMSNGSLYDHIFNREKELPLSWKKRLEICIGAARGVHYLHTGARRTIVHRDIKPSNILLDSNMVAKISDFGLSLLGALATSKPKPIAKGIIAGTMGFLAPEVFLDTCVGWTDRYDVYSFGMVLLEVICAKPCWDIIEEMMGPGAKIQISSDDESESFRHYVISRLRAEEIIDPALTGKIAPECKEVFIDIIVDCLKYEPNERPTMGEVEMELERALTLQLEADARNTSGHHYSLSSTTITQQQEAPIAV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00039 294 Pfam Protein tyrosine and serine/threonine kinase 4 256 IPR001245 GO:0004672|GO:0006468
Sebi29g00039 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Sebi29g00039 294 SMART serkin_6 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00039 294 Gene3D Transferase(Phosphotransferase) domain 1 48 281 - -
Sebi29g00039 294 PIRSF ILK 2 272 - -
Sebi29g00039 294 PANTHER OS07G0166700 PROTEIN 4 264 IPR045272 GO:0004714|GO:0006468
Sebi29g00039 294 MobiDBLite consensus disorder prediction 274 294 - -
Sebi29g00039 294 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Sebi29g00039 294 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00039 294 SUPERFAMILY Protein kinase-like (PK-like) 8 257 IPR011009 -
Sebi29g00039 294 FunFam Os07g0541700 protein 47 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00039 Sebi-Chr29 526717 527804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00039 7 271 Receptor kinase-like Gene Family AT5G39000 44.444 4.75e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi29g00039 PK_Tyr_Ser-Thr 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00039 - - lja:Lj1g3v3029330.1 318.931