Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00038 ATGAACAAGGAACACCAACATAAATTGGAGTTCAAGAAGGAAATTGAGTTGCTCTGCCAGCTTCATCACCCTAATTTGGTCTCTCTCATAGGATTCTGCATCCAAAAAAATGAGATGATTATTGTGTACGAGTATATGCCCAATGGATCTCTGTATGATCATCTACACAATAGGAATATGGAACCACTCTCATGGAGAAAAAGGCTAGAAATATGCATAGGAGTTGCTCGTGGGGTGCACTACCTTCACACAGGAGCCAGACGCACCATCCTTCACCGTGACATCAAACCCTCTAACATTCTTTTGGATAGCAATATGCTCCCCAAAATCTCAGATTTCGGGCTTTCCTTACAGGGTCCGCTGTCTACTTCAAAGCCAAAACAGATTGAAGTAAAATATCTTGCAAGTACAATTGGTTTAATAGCTCCTGAGAATTGGAATACGTTGGGCGGTTTGACTGATCGAAGTGACGTTTATTCCTTTGGCATTGTTCTATTAGAAGTGATATGTGCAAAGCCATATTATGAAATTTTAATGGAGATGGAAAGGATCCAAAGTGAAGAATTATCATTTGCTGCTTACATTAAGCGAAGGCTGCGAGCTGAGGATATTGATAGGATTCTAGCTGGAACAATTGCATCAGAGTGTTTGGAAGTATACGTAGATATTATAGATAGCTGCTTGAAGGATGAACCAAATGATCGACCAACAATGGGTGAGGTGGAGGTGGAACTTGAGCGTACTCTTACTTTGCAACTGGAAGCAGACGCCAGCTGGAATATAATTACTTAA 792 0.4078 MNKEHQHKLEFKKEIELLCQLHHPNLVSLIGFCIQKNEMIIVYEYMPNGSLYDHLHNRNMEPLSWRKRLEICIGVARGVHYLHTGARRTILHRDIKPSNILLDSNMLPKISDFGLSLQGPLSTSKPKQIEVKYLASTIGLIAPENWNTLGGLTDRSDVYSFGIVLLEVICAKPYYEILMEMERIQSEELSFAAYIKRRLRAEDIDRILAGTIASECLEVYVDIIDSCLKDEPNDRPTMGEVEVELERTLTLQLEADASWNIIT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00038 263 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00038 263 Pfam Protein tyrosine and serine/threonine kinase 3 243 IPR001245 GO:0004672|GO:0006468
Sebi29g00038 263 SUPERFAMILY Protein kinase-like (PK-like) 6 245 IPR011009 -
Sebi29g00038 263 FunFam Os07g0541700 protein 46 135 - -
Sebi29g00038 263 SMART serkin_6 6 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00038 263 PANTHER OS07G0166700 PROTEIN 4 252 IPR045272 GO:0004714|GO:0006468
Sebi29g00038 263 Gene3D Phosphorylase Kinase; domain 1 1 46 - -
Sebi29g00038 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Sebi29g00038 263 Gene3D Transferase(Phosphotransferase) domain 1 47 258 - -
Sebi29g00038 263 PIRSF ILK 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00038 Sebi-Chr29 519342 520479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00038 4 255 Receptor kinase-like Gene Family AT5G39000 45.560 5.94e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi29g00038 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00038 - - ahf:112743375 291.197