Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00025 ATGCCTTCCTTTCTCTATTACACTGATCCCAGCGACTTCAATTATAAAATTAAGCTGGTCGGTCATGATGATGTTCAATTCCAAATTCAAAACAACAAAGCTCTGGAGACACTTTACAGAGTCAATGTTGGTGATAATCAGGTTCCACCTAGCAACGATACCGCTGAGACTTTGGCAGAGCAAAACGCCGATGTGATAAGCTGGAGTGGCAATAACTCGGTTCCTGTTCATAAAGATTATGCTGTGTTTATGTCCACCCAAGGAAGCTCTAGGAAAGTTAATATTTCCATCAAGCTGCAACGATTGCCAAAGGGCATGACCACTAAATACCATGATGTGATATTGAATGGGATCGAGATTTTCAAAATTAGTGATGAGAATAACAATCTCGCTGGTCCGAATCCCGAACCTATTCTTCTATCTCCTCCGCAACAAGCATCGTCCAAAAACTCAAAGACCACCACAGTTATCGTTGCCGTTGTTGCAGTTTCAGTTTCAGGTCTCATACTAGCATCTGTCATTGGCATCATCATAGTTTTCCGGCGAAGGAGAAAAGGTCAACGCAGTAACGAAGAAAAGACGACAGAGAATAAAGGGGCAACTTTGCCATCGCATTTGTGCCGTTGTTTTACAATTGCAGAGATCAGAACTGCCACTAACAACTTCGATGAGGTTTTCATCATCGGGGTTGGAGGATTTGGCCACGTGTATAAAGGTTACATCGATGGAACCACACCCGTTGCGATCAAGCGCCTCAAACCAGGTTCTCAACAAGGTGCCAAGGAGTTTATGAACGAGATTGAGATGCTTTCTCAGCTTCGCCATCTTCATTTGGTTTCCCTCATTGGCTACTGCAACGATGGTGTAGAGATGATACTCGTTTATGACTTCATGGCGCGTGGCACTCTCCGCGAGTATCTCTACCACTCTGATAACCAACCTCTTTCCTGGAAGAAGAGGCTTGAGATCTTATTGGGTGCAGCGAGAGGGTTGCATTATCTTCATACAGGTGCGCAGCACAATATCATTCACCGTGACGTGAAGAGCACGAACATCTTGTTGGATGAGAAATGGGTTGCCAAGGTGTCTGACTTTGGGTTATCGAAAGTGGGGCCCACAGGGATGTCTACGACCCACGTCAGCACTGTAGTGAAGGGGAGCTTTGGGTATTTGGACCCGGAATACTACAAGCGTCAACGGTTGACTCTTAAGTCTGACGTGTACTCATTCGGTGTGGTGCTTTTTGAGGTGCTGTGTGGAAGGCCTCCTTTTGTTCGTACGATGGGCAAGGACAAGGCAAATTTGGTTGATTGGGTTCGGAGGTGTTATGATAAAGGAGAGATTGATCAGACGGTGGATCCATTTATAAAGGATTCTGTTACGGCTGAGTGTTTGAAATGTTACAGCCAGATGGCGATGGGTTGTTTGCGTGATGATGGGAATCAACGGCCCTCGATGAATGATGTGGTTGGGGCATTACAGTTTGCGTTGCAGTTGGTGGAGGGTGGAGAAGAAGATAACAAGTTTGGTGGGACCCAAGAAGACGGAAACGGTAAGGAAAGACTGTTGTTTCCGCAGTTTGTTAATATGAGTGATGAAGGGAGTGACGTGCTTTTCACCAGTACTGATGAATCCGGGACCCAAAGTAGCAAGGTGACCTTAGTCTCAGACACTACTGAGGAACAGCCTTCGGTCTCTGCTGTTGTGTTTTCTGAGATTGGGAATCCAATAGCACGATAG 1740 0.458 MPSFLYYTDPSDFNYKIKLVGHDDVQFQIQNNKALETLYRVNVGDNQVPPSNDTAETLAEQNADVISWSGNNSVPVHKDYAVFMSTQGSSRKVNISIKLQRLPKGMTTKYHDVILNGIEIFKISDENNNLAGPNPEPILLSPPQQASSKNSKTTTVIVAVVAVSVSGLILASVIGIIIVFRRRRKGQRSNEEKTTENKGATLPSHLCRCFTIAEIRTATNNFDEVFIIGVGGFGHVYKGYIDGTTPVAIKRLKPGSQQGAKEFMNEIEMLSQLRHLHLVSLIGYCNDGVEMILVYDFMARGTLREYLYHSDNQPLSWKKRLEILLGAARGLHYLHTGAQHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSTTHVSTVVKGSFGYLDPEYYKRQRLTLKSDVYSFGVVLFEVLCGRPPFVRTMGKDKANLVDWVRRCYDKGEIDQTVDPFIKDSVTAECLKCYSQMAMGCLRDDGNQRPSMNDVVGALQFALQLVEGGEEDNKFGGTQEDGNGKERLLFPQFVNMSDEGSDVLFTSTDESGTQSSKVTLVSDTTEEQPSVSAVVFSEIGNPIAR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00025 579 MobiDBLite consensus disorder prediction 539 558 - -
Sebi29g00025 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Sebi29g00025 579 CDD STKc_IRAK 228 490 - -
Sebi29g00025 579 SUPERFAMILY Protein kinase-like (PK-like) 200 495 IPR011009 -
Sebi29g00025 579 ProSiteProfiles Protein kinase domain profile. 222 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00025 579 SMART serkin_6 222 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00025 579 PANTHER OS07G0166700 PROTEIN 206 499 IPR045272 GO:0004714|GO:0006468
Sebi29g00025 579 FunFam Receptor-like protein kinase FERONIA 298 515 - -
Sebi29g00025 579 Gene3D Transferase(Phosphotransferase) domain 1 298 508 - -
Sebi29g00025 579 Gene3D Phosphorylase Kinase; domain 1 182 297 - -
Sebi29g00025 579 FunFam Receptor-like protein kinase FERONIA 194 297 - -
Sebi29g00025 579 ProSitePatterns Protein kinases ATP-binding region signature. 228 250 IPR017441 GO:0005524
Sebi29g00025 579 Pfam Protein tyrosine and serine/threonine kinase 228 490 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00025 Sebi-Chr29 448012 450053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00025 59 579 Receptor kinase-like Gene Family AT3G51550 47.594 2.33e-166 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi29g00025 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00025 - - lja:Lj0g3v0259209.1 682.174