Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00007 ATGTTTTCTCCTTCCTCTTCTTGCACTGTTGCTGCTACTACTACTACTTCAGCAATCAAATGGAGGCTCTTTCACAAACCCATAACCCCTCTGCACGTTCTCTTCTGGATTGTCCTACTTTTCTGCTGCAACAAAGCCGTTTTGGCCGATTCCGACGAATCAGTGCTGATTCAGCTCAAGAACTCACTCTCCGACCCTTCGGGTTTGCTCTCGAGCTGGGACCCCACCAAGGGTTCGAGCCACTGTTCCTGGTTCGGTGTCCTCTGCGACTCTCTTTCGCACCGCGTCGTCGCGATCAACGTCACCGGCAACGGAGGTAACCGAACAAACCCTTCTCCGTGTTCCGATTTTACTGAATTTCCCCTCTACGGTTTTGGAATTAGGAGGAGCTGTGAGGGTAGTGGAGGGGCATTGTTTGGGAAGTTTTCCCCTTTGTTCAGTAAGCTCACTGAGCTTAGGGTTTTGTCCCTTCCCTTCAACGGTTTGGAGGGTGTGATTCCTGATGAAATTTGGGGTATGGAGAAGTTGGAGGTTCTTGATCTTGAGGGAAATTTGTTAAGTGGGTATCTTCCTGTTCGGTTTACTGGGTTGAGGAACTTGAGGGTTCTTAATCTAGGGTTTAATAGGATTGTTGGGGAGATACCAAATTCGTTGTCAAGTGTTGCAGGTTTGGAGGTTTTGAATTTGGCTGGAAATGGCATCAATGGTTCTGTTCCTGGTTTTGTTGGTAGGCTGAGAGGGGTGTATCTGTTTTTCAATCTGCTTGGTGGGACTATTCCGCAAGAGATAGGTGATGATTGTGGGAGGCTTGAGCATCTTGATTTGTCTGGGAATTTCCTGGTTCAGGGGATTCCAAGTAGTTTGGGGAATTGTACTGAGTTGAGGACTCTTTTGCTGTATTCAAATTTATTGGAGGATGTTATTCCAGCTGAGCTTGGTAAGCTTAAGAAGCTTGAGTTGTTGGATGTTTCAAGGAATACTCTTGATGGTGTGGTGCCCCATGAGCTTGGGAATTGTACAGAATTGTCTGTCCTTGTTTTGTCTAATCTGTTTAATCCACTGCGGGATGTCAATGGTACAGCAAGGGACTCTTCACTTGAGCAGTCAGCTTCTACAACTGATGAATACAATTATTTTGAAGGTTCGATTCCTGAGGAAATTATGAGCCTTCCTAAGCTGAGAATACTGTGGGCGCCAAGGGCAAATCTGGAATACAGCTTTCCAAGCAGTTGGGATACTTGTGATAACTTGGAGATTCTCAATTTGGCTCGCAATGATTTCACTGGGGATTTTCCTAATCAGCTTACTCGCTGCAAGAAGCTTCATTTTCTTGATTTAAGCTCAAACAACCTTACTGGCAAGCTCCCAGAAGAACTTCCTGTTCCTTGTATGACTGTGTTTGATGTTAGTGGAAATGTCTTATCTGGCTCAATTCCTAAATTCTCTATTGATGCGTGTCCCTCAGTTCCTTCCTGGAATGGAAATCTGTTTGAAACTGACAACAGAGCCCTTCCATACGGCTCCTTTTTGCTTCAAAGCATGGAGTCATTGCCAATAGCACGTGACAAATTGGGGAAGGGATTTGTTTACTCAATTCTTGTTGGAGAAAACAACCTGGCAGGACTGTTTCCTACTAATTTATTTGAGAAATGTGATGGATTAAATGCATTGCTTTTAAATGTGAGTTATACTAGGTTATCTGGTCCGATTCCTTCCAAGTTTGGCGGAATGTGCAGATCGTTAAAATTCTTGGATGCATCTGGAAATCAGATTACCGGGCCAATCCCCCCTGGTTTAGGGGACTTGGTGTCTCTTGTTGCTCTGAACCTGAGTCGGAACCATTTACAAGGTCAGATTCCCACCAGCCTTGGCCAGATGAAGGATCTGAAGTTTCTCTCTCTGGCTGATAATAACTTAAGTGGTTCCATTCCCACCATCCTTGAGCAGCTGTATTCTTTGCAAGTTTTGGATCTCTCTTCAAATTCTCTTTCTGGTGAAATTCCAAAAGGTATTGAAAACTTGAGAAATCTGACTGATATTTTTCTCAACAATAACAATCTCTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTGTCATTCAATAACTTATCTGGATCTTTGCCATCAAATAGTAACTTGATAAAATGCAGCAGTGCTGTTGGGAATCCTTACATACGTTCTTGCAAAGGAGTTTCTCTTTCTGTGCCATCAGCAGATCAACATGGGCTGGTTGATAATTCTAATTCTTATACTGCTGCACCACCAGAACCTATGGGCAAAAAGAGTGGGAATGGTTTCAACTCTATTGAGATAGCATCTATAACTTCTGCATCTGCCATTGTGTCTGTTCTTCTAGCCCTAATTGTGCTTTTCATTTATACGCGGAAGTGGAACCCAAGGTCCAGGGTTGTTGGGTCTACAAGAAAAGAAGTTACAGTGTTCACTGACATTGGGGTTCCATTGACATTTGAAAATGTTGTCCGTGCCACTGGAAATTTCAATGCAAGCAACTGCATTGGGAATGGGGGATTTGGAGCAACTTACAAGGCAGAGATATCACCAGGAAACTTAGTGGCAATAAAACGTTTGGCTGTTGGACGATTCCAAGGTGCTCAACAATTCCATGCAGAGGTCAAGACACTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTAGTGATACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAATCTGGAAAAGTTTATCCAGGAGAGGTCCAGAAGGGCTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGATATAGCTCGAGCACTTGCATACCTGCATGATCAGTGTGTACCGCGGGTGCTTCATCGAGATGTCAAGCCAAGTAATATCTTATTGGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAAACTCATGCTACCACTGGCGTAGCAGGAACATTTGGCTATGTTGCTCCTGAATATGCCATGACATGTCGTGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCATATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTTCTGCGACAAGGCCAGGCAAATGAGTTCTTCACTGCTGGTTTATGGGAAGCAGGACCTGCAGATGATTTGGTTGAGGTCCTACACTTAGCTGTTGTTTGTACTGTGGACTCACTCTCTACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCACCATCATGTTAG 3363 0.4386 MFSPSSSCTVAATTTTSAIKWRLFHKPITPLHVLFWIVLLFCCNKAVLADSDESVLIQLKNSLSDPSGLLSSWDPTKGSSHCSWFGVLCDSLSHRVVAINVTGNGGNRTNPSPCSDFTEFPLYGFGIRRSCEGSGGALFGKFSPLFSKLTELRVLSLPFNGLEGVIPDEIWGMEKLEVLDLEGNLLSGYLPVRFTGLRNLRVLNLGFNRIVGEIPNSLSSVAGLEVLNLAGNGINGSVPGFVGRLRGVYLFFNLLGGTIPQEIGDDCGRLEHLDLSGNFLVQGIPSSLGNCTELRTLLLYSNLLEDVIPAELGKLKKLELLDVSRNTLDGVVPHELGNCTELSVLVLSNLFNPLRDVNGTARDSSLEQSASTTDEYNYFEGSIPEEIMSLPKLRILWAPRANLEYSFPSSWDTCDNLEILNLARNDFTGDFPNQLTRCKKLHFLDLSSNNLTGKLPEELPVPCMTVFDVSGNVLSGSIPKFSIDACPSVPSWNGNLFETDNRALPYGSFLLQSMESLPIARDKLGKGFVYSILVGENNLAGLFPTNLFEKCDGLNALLLNVSYTRLSGPIPSKFGGMCRSLKFLDASGNQITGPIPPGLGDLVSLVALNLSRNHLQGQIPTSLGQMKDLKFLSLADNNLSGSIPTILEQLYSLQVLDLSSNSLSGEIPKGIENLRNLTDIFLNNNNLSGQIPAGLANVSTLSAFNVSFNNLSGSLPSNSNLIKCSSAVGNPYIRSCKGVSLSVPSADQHGLVDNSNSYTAAPPEPMGKKSGNGFNSIEIASITSASAIVSVLLALIVLFIYTRKWNPRSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEISPGNLVAIKRLAVGRFQGAQQFHAEVKTLGRLRHPNLVTLIGYHASDTEMFLIYNYLPGGNLEKFIQERSRRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQANEFFTAGLWEAGPADDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00007 1120 PRINTS Leucine-rich repeat signature 441 454 - -
Sebi29g00007 1120 PRINTS Leucine-rich repeat signature 650 663 - -
Sebi29g00007 1120 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 507 741 - -
Sebi29g00007 1120 Gene3D Ribonuclease Inhibitor 356 497 IPR032675 -
Sebi29g00007 1120 SMART serkin_6 841 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00007 1120 Pfam Leucine Rich Repeat 199 220 IPR001611 GO:0005515
Sebi29g00007 1120 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515
Sebi29g00007 1120 Pfam Leucine Rich Repeat 652 674 IPR001611 GO:0005515
Sebi29g00007 1120 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 805 916 - -
Sebi29g00007 1120 Gene3D Ribonuclease Inhibitor 49 244 IPR032675 -
Sebi29g00007 1120 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 260 354 - -
Sebi29g00007 1120 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 371 455 - -
Sebi29g00007 1120 Gene3D Transferase(Phosphotransferase) domain 1 917 1117 - -
Sebi29g00007 1120 SUPERFAMILY RNI-like 141 488 - -
Sebi29g00007 1120 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 917 1119 - -
Sebi29g00007 1120 Gene3D Ribonuclease Inhibitor 245 355 IPR032675 -
Sebi29g00007 1120 Gene3D Ribonuclease Inhibitor 529 742 IPR032675 -
Sebi29g00007 1120 Pfam Protein kinase domain 844 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00007 1120 ProSitePatterns Protein kinases ATP-binding region signature. 847 869 IPR017441 GO:0005524
Sebi29g00007 1120 SUPERFAMILY L domain-like 532 717 - -
Sebi29g00007 1120 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 292 1114 - -
Sebi29g00007 1120 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672|GO:0006468
Sebi29g00007 1120 CDD STKc_IRAK 847 1115 - -
Sebi29g00007 1120 SMART LRR_typ_2 602 626 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 197 221 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 149 172 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 650 673 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 173 196 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 674 697 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 315 339 IPR003591 -
Sebi29g00007 1120 SMART LRR_typ_2 267 291 IPR003591 -
Sebi29g00007 1120 SUPERFAMILY Protein kinase-like (PK-like) 823 1112 IPR011009 -
Sebi29g00007 1120 Pfam Leucine rich repeat N-terminal domain 49 90 IPR013210 -
Sebi29g00007 1120 ProSiteProfiles Protein kinase domain profile. 841 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi29g00007 1120 Gene3D Phosphorylase Kinase; domain 1 804 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00007 Sebi-Chr29 109895 113340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00007 30 1120 Receptor kinase-like Gene Family AT3G02130 63.047 0.0 1325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Sebi29g00007 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00007 - - gmx:100803891 1787.7