Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi29g00002 ATGGAGCAAAGACAGATCTTTGTTCATGTGGTGATTTTCTTGTTTATGGTCCTACTTAGAGCAACTTATTATGGCACTGTTAAAGCAGAAGGAGGAAGAGAAGAAGCTGATAGGATTTTGGAACTCCCTGGTCAACCCAAGGTGTCATTTCAGCAGTTCTCTGGCTATGTTACTGTCAATAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTTCCCAAAATCCTCTCACCAAACCCCTTGTTATTTGGCTCAATGGAGGTCCAGGTTGTTCATCCGTGGCATATGGAGCATCCGAAGAGATTGGACCATTTAGGATTAACAAGACAGCTTCAGGACTATACATTAACAAGTTCTCATGGAACACTGTGGCCAACCTCTTATTCTTGGAAACTCCGGCCGGCGTTGGCTTCTCCTACACCAACCGCTCCTCCGATCTTCTCGACACCGGCGACCGCCGCACTGCGAAAGACTCTTTGGAATTTGTAATCCAATGGCTAGAACGATTTCCACGTTATAAGAACAGGGAGCTATACATCAGTGGAGAGAGCTATGCAGGGCATTATGTGCCTCAATTAGCTAAGGAAATCATGACCTATAACACACAAACCAAGCACCCTATCAATCTCAAGGGCATAATGGTTGGGAATGCAGTGACAGACAACTATTATGATAACTTGGGGACAGTAACGTACTGGTGGAGCCATGCTATGATATCGGATGAGACATACAGACAATTGATGAGCACGTGTGATTTTCACCGTCAGAAGGAATCCGATGAATGTGAGTCTCTATATAGCTACGCCATGGATCAAGAGTTTGGTAACATTGATCAATACAACATCTATGCTCCTCCTTGCAACCACTCTGATGGCACCTCTTTCACTCGCCATTCCATTCGCTTCCCTCACCGTCCCCATCTGCAGGGTTTGAGGCAATTGTCTGGTTATGATCCATGTACGGAAAAATATGCAGAGATTTACTACAATAGGCCTGATGTTCAGAAAGCACTCCATGCAAACACAACTGGCATTCCTTATAAATGGACTGCTTGCAGTGAGGTTTTGAATCGAAACTGGAATGATACAGATGTATCTATTCTTCCAATTTATAGAGAGTTGATAGCTCATGGAATAAGAGTTTGGGTGTTCAGTGGGGATGTTGATTCTGTGGTGCCGGTTACAGCAACAAGATATGCACTTGCACAGCTTAAGTTGGCTACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAAGTGTATGAAGGGGTAACATTTGCCACTGTGAGAGGAGCAGGGCATGAAGTTCCATTATTCAAGCCTAGAGCAGCACTTCAGTTATTCAAATCATTCCTTGCAGGAAAGCCTCTCCCAAAATCCTAA 1410 0.4426 MEQRQIFVHVVIFLFMVLLRATYYGTVKAEGGREEADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEASQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLETPAGVGFSYTNRSSDLLDTGDRRTAKDSLEFVIQWLERFPRYKNRELYISGESYAGHYVPQLAKEIMTYNTQTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDETYRQLMSTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNHSDGTSFTRHSIRFPHRPHLQGLRQLSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYKWTACSEVLNRNWNDTDVSILPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi29g00002 469 ProSitePatterns Serine carboxypeptidases, histidine active site. 433 450 IPR033124 GO:0004185
Sebi29g00002 469 FunFam Carboxypeptidase 369 463 - -
Sebi29g00002 469 Gene3D alpha/beta hydrolase 33 291 IPR029058 -
Sebi29g00002 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Sebi29g00002 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Sebi29g00002 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Sebi29g00002 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Sebi29g00002 469 Pfam Serine carboxypeptidase 44 462 IPR001563 GO:0004185|GO:0006508
Sebi29g00002 469 Gene3D - 369 463 - -
Sebi29g00002 469 SUPERFAMILY alpha/beta-Hydrolases 41 467 IPR029058 -
Sebi29g00002 469 Gene3D - 322 359 - -
Sebi29g00002 469 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Sebi29g00002 469 FunFam Carboxypeptidase 33 291 - -
Sebi29g00002 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 450 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi29g00002 Sebi-Chr29 5789 10999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi29g00002 327 466 Calmodulin-binding Proteins AT2G22960 31.206 4.92e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi29g00002 K16297 - gmx:100807680 879.396