Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi298g00039 ATGTTAGCTAACAAGAATTCTGGAGAGAATGAGTTAGGAAGGAACAAGGGAAAAGAAGATGTGAGTGACAACCATGGATGTTCCTTCCCAATCGCTGACGCGGACAAGGCCATAGAGGATCTCGATTCAGGCAAAAGGAAGCGATATCACCGCCCACTCCAACACCAGATACAACAGATGGAAATGTTCTATAAGGAGTGCCCTCACCCAGATGACAAGCAAAGGAAGCCTTGGGCGATGAGCTCGGGCTCGACCCTTTGCAAATCAAGTTTTTGGTTCCAGAACAAGCGTACCCAAGTAAAGGCTCAACAAGAACGCCATGACAATGCTCTTCTGAAGGGTGAGAATGAAAAGCTTTGTGCTGACAATGCTAGGTTACAAGGAGGCACTGAGTCATGCTACATGCCCTACCTGTGGAGGGCCCCTGTTGGTGAAATGTCCTTTGACGAACAACGCTTGAGAATTGAGAATACCCGATTAAGAGAAGAAATTCAAAGGATGTTGGGAATGACCGCACAAAATGATGGGAAAGCCCTGTGA 540 0.4704 MLANKNSGENELGRNKGKEDVSDNHGCSFPIADADKAIEDLDSGKRKRYHRPLQHQIQQMEMFYKECPHPDDKQRKPWAMSSGSTLCKSSFWFQNKRTQVKAQQERHDNALLKGENEKLCADNARLQGGTESCYMPYLWRAPVGEMSFDEQRLRIENTRLREEIQRMLGMTAQNDGKAL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi298g00039 179 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 174 IPR042160 -
Sebi298g00039 179 Gene3D - 35 117 - -
Sebi298g00039 179 CDD homeodomain 46 104 IPR001356 GO:0003677
Sebi298g00039 179 MobiDBLite consensus disorder prediction 1 29 - -
Sebi298g00039 179 Pfam Homeodomain 46 101 IPR001356 GO:0003677
Sebi298g00039 179 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Sebi298g00039 179 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Sebi298g00039 179 SMART HOX_1 44 107 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi298g00039 Sebi-Chr298 1075758 1076619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi298g00039 5 179 Homeobox Transcription Factor Family AT4G04890 45.304 4.94e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi298g00039 Homeodomain 3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi298g00039 K09338 - qsa:O6P43_031218 165.622