Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi298g00017 ATGGCTGAGTTCACCGAATTGTTTCCCTTAGGCAAGCAATTAGATGGTTTAATGAACATGTATGTGTATATCATCACTTTTGATCTCCCAACTTTCATCGTTGTTTGTGTCATAGTCACTCTGTTCTTCTTCATCTTTTATCAAATTCTCTACGGTTTATTCTATTGGTTCATGGAAATGAGGCCGGATGAATTACACGATCTTGAAGAAGGAACTCATATATCTTATGATGTCTCTAGTCCATCTCATCAGGTTACCATCTTTCATGCTCTTGTCCTTGGCAATTTACAGGCTTGGGCAATGTTAGTTGCATATGAAGAAGGAGATTTTGAAGAGAAACGAGGGAATATGCTTAGAGCTTTAAGGAAATTGCCTCCCTTGGTGAACTATGGAAGGCATGACATAGTAAGAAGTTGTAATGAGTGTGCCATTTGCTTGGAAGATTTCGAAGTAGGCCAATTCTGCCAAGTTTTTCCTGTATGCAATCATATTTTCCATTCAGATTGCATAGACAATTGGTTGCAGAAGAAATCAACATGTCCAATATGTCGTACTTGCATAGATTAA 567 0.3792 MAEFTELFPLGKQLDGLMNMYVYIITFDLPTFIVVCVIVTLFFFIFYQILYGLFYWFMEMRPDELHDLEEGTHISYDVSSPSHQVTIFHALVLGNLQAWAMLVAYEEGDFEEKRGNMLRALRKLPPLVNYGRHDIVRSCNECAICLEDFEVGQFCQVFPVCNHIFHSDCIDNWLQKKSTCPICRTCID 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi298g00017 188 SUPERFAMILY RING/U-box 141 187 - -
Sebi298g00017 188 SMART ring_2 142 183 IPR001841 -
Sebi298g00017 188 CDD RING-H2_PA-TM-RING 141 184 - -
Sebi298g00017 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Sebi298g00017 188 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Sebi298g00017 188 Pfam Ring finger domain 140 184 IPR001841 -
Sebi298g00017 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 31 185 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi298g00017 Sebi-Chr298 403650 404216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi298g00017 24 184 C3H Transcription Factor Family AT1G53010 31.977 3.16e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi298g00017 - - gmx:102660073 273.092