Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00073 ATGAAACTAATTAGACACCCAAATGTCATACATATGTATGAGGTGATGGCTAGCAGGACAAAGATATACATTGTATTGGAACTTGTGACTGGTGGAGAACTGTTTGATAAAATTGCAAACCATGGGAGACTGAAAGAAGATGAAGGAAGAAAATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGACTTAAAGCCGGAGAATTTGTTACTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGCTACTTCACACAAAATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACGACAAAGGCTATGATGGGGCAAAGGCTGATCTGTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGTCTGGTTATTTGCCCTTTGACGATAACAACCTTGTGGCTTTATATAAAAAGATTTCCAAGGCTGAGTTTACTTGTCCTTCATGGTTTTCTTCAAGTGCAAAGAAACTAATCAAGAGAATATTGGATCCCAATCCTGCAACACGGATCACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCTGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTAAATGCTATTTTCAGTAAAGCAGATGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAAGGGCCTGTTGCACCTATGACTATGAATGCCTTTGAGCTTATCTTTAAGTCTCAGGGCCTCAACCTTGGAAATCTTTTTGGGAAACAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAACAGATGAGATAATTTCAAAAATTGAGCAGGCTGCATTGCCTCTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATCTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGGGGAGATACTCTGGAATTTTATAAGTTCTACAAGAATCTATCTAATGGGCTAAGAGATATAATTTGGAAAGCAGAGCCAATCGATGAAGAAACAAATGGTGCTAGTACATCAACATAA 1164 0.396 MKLIRHPNVIHMYEVMASRTKIYIVLELVTGGELFDKIANHGRLKEDEGRKYFQHLICAVDYCHSRGVFHRDLKPENLLLDADGVLKVSDFGLSALPQQVREDGLLHTKCGTPNYVAPEVIHDKGYDGAKADLWSCGVILFVLMSGYLPFDDNNLVALYKKISKAEFTCPSWFSSSAKKLIKRILDPNPATRITIAEVIENEWFKKGYVLPPRFSEANVSLDDVNAIFSKADDSQNLIVERREEGPVAPMTMNAFELIFKSQGLNLGNLFGKQMGLVKRETRFTSKCSTDEIISKIEQAALPLGFSVKKNNYKVKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFYKFYKNLSNGLRDIIWKAEPIDEETNGASTST 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00073 387 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi297g00073 387 SUPERFAMILY Protein kinase-like (PK-like) 1 216 IPR011009 -
Sebi297g00073 387 FunFam Non-specific serine/threonine protein kinase 1 245 - -
Sebi297g00073 387 CDD CIPK_C 253 363 - -
Sebi297g00073 387 ProSiteProfiles NAF domain profile. 247 271 IPR018451 GO:0007165
Sebi297g00073 387 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi297g00073 387 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 357 - -
Sebi297g00073 387 FunFam Non-specific serine/threonine protein kinase 246 372 - -
Sebi297g00073 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672|GO:0006468
Sebi297g00073 387 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Sebi297g00073 387 Gene3D Transferase(Phosphotransferase) domain 1 34 209 - -
Sebi297g00073 387 Pfam NAF domain 249 309 IPR004041 GO:0007165
Sebi297g00073 387 Gene3D Kinase associated domain 1, KA1 247 372 - -
Sebi297g00073 387 Pfam Protein kinase domain 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00073 Sebi-Chr297 1008023 1012913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00073 16 386 CBL-interacting serine-threonine protein kinases AT1G30270 77.067 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi297g00073 Pkinase 2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00073 - - gmx:100788746 653.669