Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00062 ATGAAACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTGGTCTACTTTCCACAGGGTCACAGTGAACAGGTTGCTGCATCTACCAACAGGGAAGTGGATGCCCATATCCCCAACTATCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACCGAGACAGATGAAGTATATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAAGAGGCATACCTTCCAGCAGAATTGGGCAGTCCGAGTAAACAGCCGACAAACTACTTTTGCAAAATTTTGACAGCCAGTGACACAAGCACTCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCGCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGACTTGCATGGCAATGAATGGAAATTCAGACATATCTTCCGTGGCCAGCCCAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGACGGGCTAATCGACCGCAACCTGTGATGCCTTCATCAGTGTTGTCCAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCAAAATATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTATTTGAAACAGAGGAATCTAGTGTGCGGCGGTTGGCTGGGATGAATCCACAGCAGGTGAGAGGCAACCTCGAGTCTCTCTATGGGAAATTGAACCATTAA 1002 0.4611 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRLAGMNPQQVRGNLESLYGKLNH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00062 333 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 314 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi297g00062 333 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Sebi297g00062 333 Gene3D - 291 318 - -
Sebi297g00062 333 FunFam Auxin response factor 125 229 - -
Sebi297g00062 333 Pfam Auxin response factor 253 315 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi297g00062 333 SMART B3_2 127 229 IPR003340 GO:0003677
Sebi297g00062 333 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Sebi297g00062 333 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Sebi297g00062 333 CDD B3_DNA 126 227 IPR003340 GO:0003677
Sebi297g00062 333 Gene3D - 125 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00062 Sebi-Chr297 904764 908668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00062 1 314 B3 DNA Binding Superfamily AT1G30330 92.405 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi297g00062 B3 4.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00062 - - gmx:100806203 608.601