Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00054 ATGGAAATTATGCCATACCAGCTTTCTCGGTTACCTTACCAGGATTCCCTCAAACTGCTAGAGGCTGATATTCAACATGCCAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAAGGTGGGACTCTTCTCCAAATGAAATTGGTTTACAGTCCCTTGGCTCCTCTCTTTCTATTGTTGCTACAGTGGATGGATTGCTCTTGTACATGCTTTCTACACAGATATCTCAGCCTTTTCCACATACTTATTTACAAGGTACACAATGATGGTAGATCAAACATAACTTCTCAGGGAAGAAAGGCTACCATCCAGGACTTCTATGCCGTTATACTGCCATCTCTCCAGCGGCTTCATGGTAGCATGGAGAAGTTGGAGATTTGTAAGAAAGGGCACTCTTGCTTTGAAGGTTCAAGTTATGGCAAGAAGGTGATTGAAGGAAATGGGAAACTGATCAATGTTGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCATGTACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACACACGGTCAGAATCTTGTCCTTTTTGCCGTGGTAGTTTAAGGAGAGTTAATTCTGAGGATTTATGGGTTCTCACTTGTAATGAAGATGTAGTTGATACTGAAACAGTTTCCAAGGAGGACTTGTTGCGTTTCTACCTCTATATCAACAGCCTACCTAAAGATTACCCAGATGCACTTTTCTTAATGTATTATGAATATCTCATTTGA 771 0.4137 MEIMPYQLSRLPYQDSLKLLEADIQHANALAAAIPRAKGGTLLQMKLVYSPLAPLFLLLLQWMDCSCTCFLHRYLSLFHILIYKVHNDGRSNITSQGRKATIQDFYAVILPSLQRLHGSMEKLEICKKGHSCFEGSSYGKKVIEGNGKLINVDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCNEDVVDTETVSKEDLLRFYLYINSLPKDYPDALFLMYYEYLI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00054 256 Pfam Ring finger domain 158 198 IPR001841 -
Sebi297g00054 256 SUPERFAMILY RING/U-box 151 202 - -
Sebi297g00054 256 PANTHER RING FINGER PROTEIN 41, 151 12 254 - -
Sebi297g00054 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 209 IPR013083 -
Sebi297g00054 256 SMART ring_2 160 197 IPR001841 -
Sebi297g00054 256 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Sebi297g00054 256 FunFam RING/U-box superfamily protein 142 207 - -
Sebi297g00054 256 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00054 Sebi-Chr297 769073 771063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00054 106 201 RAD5 or RAD16-like Gene Family AT5G05130 29.703 8.75e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00054 - - gmx:100790422 476.092