Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00052 ATGCAACATGGCACTCCAGTGGTAGTAGAAAGTCCAAATGGAAGCATGGTACAATATCAAAATCGTAGAGACTTTTCCATAGATAACAAGAAATATTGTTACACACTAAGCACAGAGGAGAGAAGAAGATACCTAGTGCGTGCAACGTTTCAATATGGAAGCTTGGAAAATGGAGACACATACCCTCAGTTTCAGCTCTACTTGGATGCAACCAAATGGACTACTGTGTCAATATATGATGCCTCAAGAATATATGTTAAGGAAATGATCATAAGGGCACCCTCAAATTCTATTGATGTCTGCATGTGTTGTGCTACAACTGGTTCTCCTTTTATATCTACTCTTGAGTTAAGGCCCTTGAATCTTTCAATGTATGCCACAGATTTTGAGGACAATTTCTTCTTAGAAGTAGCTGCAAGAATAAACTTTGGTGCTACTAGTGAGGATGCTGTCAGGTACCCAGATGATCCATATGATAGAATTTGGGAATCTGATCTTATTAGAAGGCAAAATTATCTTGTTGGTGTGGCCCCAGGCACAGAAAGAATTAGCACAACAAAGAACATAGAAATAGGGACAAGAGAATATCCACCTGTTAAAGTTATGCAAAATGCAGTTGTTGGCACAAAAGGAGTACTCAGCTACAGATTAAACCTTGAAGACTTCCCTGCTAATGCTAGAGCTTATGCATATTTTGCTGAGATTGAAGATCTGGGTAAGAATGAGACTAGAAAATTCAAATTACAGCAACCTTATATACCTGACTATAGCAATGCAGTGGTTAACATTGCTGAGAATGCCAATGGGAGCTACATTCTATATGAACCAAGTTATATGAATGTGACTCTAGAATTTGTTCTGTCATTCTCTTTTGTTAAGACCCCAGATTCTACTCGAGGACCTCTTCTAAATGCATTGGAAATAAGCAAATATGTACAGATTGCTTCAAAGACAGATAAGCAAGACTTAACTGTTGTAAATGCATTAGGATTCTTGTCTGCTGATAGTTTCCAAACAAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGAATGGGTGAATTGTAGTACCACTGCACCACCAAGGATTACAAAAATATTTCTTTCAAGAAGGAATGTGAAGGGTGAAATACCACCTGAGCTCAACAACATGGAAGCATTAACAGAGTTGTGGTTAGATGGCAACTTGCTTACAGGACCATTACCTGACATGGGCAATCTTATAAATCTAAAGATTGTGCATCTAGAGAACAACAAATTGATTGGTCGACTACCATCTTACCTGGGTAGTTTGTCAAGCTTACAAGCTCTGTTCATACAAAATAACTCATTTAGTGGGGAAATACCAACCAGATTAATATCTGGAAAAATCATTTTCAACTATGATGGTAATCCTGGACTATATAGAGAAAGCAAGAGGCACTTTAAGTTGATACTTGGAATTTCAATTGGAATATTAGTGATTCTATTAATATTATTCTTAGGAAGTTTAGTGCTATTGCATAATATGAGAAGAAAGACATCTCATCAGAAACGTGAGGAAAAAGGAATTTCTGGACGCACTAACAGTAAACCTTTAACTGCATATTCATCTGTTCGAGGTGGAAATATAATGGATGAAGGTACTACTTGCTATATTACACTCTCAGAGTTGAAAGAAGCTACTAACAATTTTTCAAAGCAAATTGGCAAAGGAAGCTTTGGATCTGTGTACTATGGGAAAATGGGAGATGGAAAAGAGGTGGCAGTTAAAAGTATGACTGATTCATCCAGCCATGGAAACCAGCAATTTGTTAATGAGGTAGCCCTCCTATCAAGAATTCATCACAGAAATTTGGTTCCTTTGATTGGATATTGTGAAGAAGAATATCAGCATCTTCTGGTTTATGAATATATGCACAATGGCACTTTACGGGATCACATTCATGAATGTTCCAAGAAGAAGAACTTAGATTGGATAGCTCGTCTTCGTATTGCAGAAGATGCAGCTAAAGCTGAAGAAGATTTAACACATATATCAAGCATTGCAAGGGGAACTATTGGCTACCTAGATCCTGAGTACTATGCAAATCAGCAATTGACAGAAAAGAGTGATGTGTATAGTTTTGGAGTTGTTCTGCTGGAACTGATATCTGGAAGAAAGCCTGTGATATCAGAAGATTATGGTGCTGAAATGAACATTGTTCATTGGGCTAGATCATTAATTTGTAAAGGAGATGTGATGAGCATCATTGACCCTTCTCTGGTTGGGAATGTCAAAAGTGAGTCCATTTGGAGGGTGGTTGAAATTGCCATGCATTGTGTAGCACAACATGGTGCCTCCAGGCCAAGGATGCAAGAAATCATTTTGGCTATACAAGATGCAATCAAGATTGAAAAAGGATCAGAAAATAAGCTAAAATCATCATCTTCAGGTAGTAGTAGTTGTTCAAAACCACATTCTTCCCGGAAAACTTTACTCACAAGCTTTCTTGAAATTGAGAGCCCTGACTTATCAAATGGTTGTCTCCCATCAGCAAGATAA 2523 0.3785 MQHGTPVVVESPNGSMVQYQNRRDFSIDNKKYCYTLSTEERRRYLVRATFQYGSLENGDTYPQFQLYLDATKWTTVSIYDASRIYVKEMIIRAPSNSIDVCMCCATTGSPFISTLELRPLNLSMYATDFEDNFFLEVAARINFGATSEDAVRYPDDPYDRIWESDLIRRQNYLVGVAPGTERISTTKNIEIGTREYPPVKVMQNAVVGTKGVLSYRLNLEDFPANARAYAYFAEIEDLGKNETRKFKLQQPYIPDYSNAVVNIAENANGSYILYEPSYMNVTLEFVLSFSFVKTPDSTRGPLLNALEISKYVQIASKTDKQDLTVVNALGFLSADSFQTNEGDPCVPTPWEWVNCSTTAPPRITKIFLSRRNVKGEIPPELNNMEALTELWLDGNLLTGPLPDMGNLINLKIVHLENNKLIGRLPSYLGSLSSLQALFIQNNSFSGEIPTRLISGKIIFNYDGNPGLYRESKRHFKLILGISIGILVILLILFLGSLVLLHNMRRKTSHQKREEKGISGRTNSKPLTAYSSVRGGNIMDEGTTCYITLSELKEATNNFSKQIGKGSFGSVYYGKMGDGKEVAVKSMTDSSSHGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHLLVYEYMHNGTLRDHIHECSKKKNLDWIARLRIAEDAAKAEEDLTHISSIARGTIGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVISEDYGAEMNIVHWARSLICKGDVMSIIDPSLVGNVKSESIWRVVEIAMHCVAQHGASRPRMQEIILAIQDAIKIEKGSENKLKSSSSGSSSCSKPHSSRKTLLTSFLEIESPDLSNGCLPSAR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00052 840 SUPERFAMILY L domain-like 346 453 - -
Sebi297g00052 840 Pfam Protein tyrosine and serine/threonine kinase 675 782 IPR001245 GO:0004672|GO:0006468
Sebi297g00052 840 Pfam Protein tyrosine and serine/threonine kinase 558 672 IPR001245 GO:0004672|GO:0006468
Sebi297g00052 840 ProSiteProfiles Protein kinase domain profile. 556 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi297g00052 840 FunFam receptor-like serine/threonine-protein kinase NCRK 536 631 - -
Sebi297g00052 840 ProSitePatterns Protein kinases ATP-binding region signature. 562 584 IPR017441 GO:0005524
Sebi297g00052 840 Gene3D Phosphorylase Kinase; domain 1 535 631 - -
Sebi297g00052 840 Gene3D Ribonuclease Inhibitor 320 459 IPR032675 -
Sebi297g00052 840 PANTHER OS07G0107800 PROTEIN-RELATED 405 789 - -
Sebi297g00052 840 Pfam Malectin-like domain 11 310 IPR024788 -
Sebi297g00052 840 Gene3D Transferase(Phosphotransferase) domain 1 664 808 - -
Sebi297g00052 840 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 358 448 - -
Sebi297g00052 840 SUPERFAMILY Protein kinase-like (PK-like) 544 783 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00052 Sebi-Chr297 760072 765185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00052 1 840 Receptor kinase-like Gene Family AT1G67720 65.045 0.0 1133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi297g00052 Malectin_like 1.2e-77 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00052 - - gmx:100809222 1397.49