Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00051 ATGGATAATGGTTGCTTCCTTTCTCCACGCCTTGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACCTGGCTGAGGATCCTTGAAAAGATGCTTAAGAAGTGCTTTTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTAAAAAAGCTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCAGTTATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTACCTCCTTAAGCCAATAAGGATGAAAGAACTTCGAAATATATGGCAACATGTCTTTAGAAAAAGAATACATGAGGCAAGAGAATTTGAAAGTCATGAGGGTTTTGAGGGTATTCACTTTATGAGAAATGGATCAGATCACTCTGATGATGGTAACCAGTTTTCTGTGGAAGAAATTACCTCAATAAAGAAAAGGAAAAATATAGATAACAATCATGATGACAAAGAATTTGGAGATCAATCTTCAACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGGATGAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCTGGGCTAACTAGAGAAAATGTTGCCAGTCATTTACAGAAATACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAAAGGAATGAAGCATCCGGATTTACCTTCAAAAGATCCAGGAAATTTCCCTTCAAAAGATCCAGGAAGTTTTAGTTTTTTGAATTCTACAAACAAGCAACAAAATGATGTTGCAATTGACAGCATCAGATATTCAGATGGAACATTGCAACTTCAGATGGATGCTACAAGTCATGAAGCTGATCTCAAGGGAATTGTCTCAGAGCTTACAACAGAAAAAAGATCTTTGACCATTGACATTCCTGACCAAAAGATAGGAAATAGTTCACAGTTGGGCCTTAATCAACCTTTTGCATTTGTAGAGTCAGAAGCAAACCATGCAGTATTAGATAGCACCATACCAACACAGTACTCTTGGAATGAAGTTCCAAAAAGGCCAATTAAAGAAGAACAAAAGACACTTGTTCAATTAAAGGATTGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATTGAGCCTGATCAATCACAATCAATTGCTTCAATTATTTCCAATCCTTCTGTAACACAAGAGGTTGCTGCCTGTTCAGAAACCAAACCTTTGTATGCTGACTACAAAAGTGATTATGTCAGTCCTGTGAATTCAATAGGGTCTGCAGTTGAAACCTTTCCTATTCAGTCCAAAAGCCTTATGGTAAATGATCAATCTCCAGAGTCCATTTTCACTACAAACTTGGGCTTGAAAACACAGGGATTTGATCTTGGTTGCATTTCTGATATGGAATTTTACCAAAGGAACCTACTTTTGGGTGATGAGGCAGTTTCTGCACCATTGGAGGAGGACTTACAATTCTTTTTGCTGCAAGGTGAATACTATAATATGGACTTTGGCTTGCAGAATATAGAGATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTTCCTACCCACTTATATGATTCAGGAGATTATTCAGTATTAGATAAAAGTCTATTCATAGCATGA 1758 0.3794 MDNGCFLSPRLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESHEGFEGIHFMRNGSDHSDDGNQFSVEEITSIKKRKNIDNNHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVDEIGFDKVGPKKILDLMNVPGLTRENVASHLQKYRLYLSRLQKENDQKSSSKGMKHPDLPSKDPGNFPSKDPGSFSFLNSTNKQQNDVAIDSIRYSDGTLQLQMDATSHEADLKGIVSELTTEKRSLTIDIPDQKIGNSSQLGLNQPFAFVESEANHAVLDSTIPTQYSWNEVPKRPIKEEQKTLVQLKDCFSQLPLHGTQHHIEPDQSQSIASIISNPSVTQEVAACSETKPLYADYKSDYVSPVNSIGSAVETFPIQSKSLMVNDQSPESIFTTNLGLKTQGFDLGCISDMEFYQRNLLLGDEAVSAPLEEDLQFFLLQGEYYNMDFGLQNIEMSEYYDPRLIAEVPTHLYDSGDYSVLDKSLFIA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00051 585 SUPERFAMILY CheY-like 17 143 IPR011006 -
Sebi297g00051 585 Gene3D - 18 167 - -
Sebi297g00051 585 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Sebi297g00051 585 CDD REC_typeB_ARR-like 20 134 - -
Sebi297g00051 585 SMART REC_2 18 130 IPR001789 GO:0000160
Sebi297g00051 585 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Sebi297g00051 585 FunFam Two-component response regulator 196 259 - -
Sebi297g00051 585 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Sebi297g00051 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 304 IPR045279 GO:0009736
Sebi297g00051 585 Gene3D - 196 259 - -
Sebi297g00051 585 MobiDBLite consensus disorder prediction 260 298 - -
Sebi297g00051 585 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Sebi297g00051 585 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Sebi297g00051 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 256 IPR017930 -
Sebi297g00051 585 MobiDBLite consensus disorder prediction 260 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00051 Sebi-Chr297 741483 745221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00051 11 266 Response Regulator Gene Family AT2G25180 53.876 9.78e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi297g00051 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00051 K14491 - gmx:100778324 944.495