Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00050 ATGCACCACCACCGAATCCTCTTTGACAAATACCATCCTGGATACTTCGGCAAGGTTGGTATGCGCTACTTCCACAAGCTCCGCAACAAGTTCTATTGTCCCATCCTCAACATCGACAAGCTCTGGTCCCTTCTTCCCCAAGACGCCAAGGAAAAGGCTTCAAAGGACACCAGCAAGGCCCCCTTGATTGATGTCACTCAGTTTGGATACTTCAAGGTTTTGGGTAAAGGCGTTTTGCCTCCCAATCAACCCCTGGTCGTCAAGGCCAAACTCGTTTCCAAGATCGCCGAGAAGAAGATCAAGGAAGCTGGTGGAGCCGTCGTCCTTACCGCTTAA 336 0.506 MHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPILNIDKLWSLLPQDAKEKASKDTSKAPLIDVTQFGYFKVLGKGVLPPNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00050 111 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 111 - -
Sebi297g00050 111 FunFam 60S ribosomal protein L27a 21 111 - -
Sebi297g00050 111 ProSitePatterns Ribosomal protein L15 signature. 72 104 IPR001196 GO:0003735|GO:0005840|GO:0006412
Sebi297g00050 111 SUPERFAMILY Ribosomal proteins L15p and L18e 2 110 IPR036227 -
Sebi297g00050 111 Gene3D - 21 111 - -
Sebi297g00050 111 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 7 108 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00050 Sebi-Chr297 729192 729527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00050 1 111 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 81.982 2.18e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00050 K02900 - gmx:100527293 209.534