Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00033 ATGTTTCCTGCTCAGTCTTTGATCTTGGAGGACCTCAGGTACTACTGGAATCCAAATCCAAATGAGTTAGAAGTTGAAAAGGTTGTTAAGGAAATATTCAAAGGCATGAATTTCTACATCCCTCTCAAAATCGTACTTGCTATGGTCACCACTTGTTCGTGCTCCAAGGCTGAGAGCGGCGATGCTGGAAACTCTGGGAAGTCCCGGAAGAAGCATCCTAACCTCATAGGTGTTAGCTTGCCGATGCCAACTGTGAAGTTGCGAAAATGCGGTGGTGGTGGGGAAGGAAACTTTGTGAAGTTGAACATGAGTGGGAAGAGGAAGAAGTTTTTGAACAAAGGGTGGAAGAAAAAGGGGAAATTTGGTCGTTTTAAAAGGTACAAGAGAAGTAAAGGTGAATTGCGACATGAAGGGGAGGATCAAGTGCAGCTTTTTGAGGAGGATGGTTTGGTTGTTGGAAGTGCAGAGCAAAAGAAAAAGCAAAAAGGGTGTTGTAAGACAAGAGAGATTGATTGCGAAGTGATGGAAGAGGCTGTGTCTGCAGCTCGAGTTGAGCATTCAGATGAGAGTTTGGTGAAGTTGTTGAAATTGATTTATGGTTATGATTCTTTTCGTGATGGGCAGCTTGAAGCAATCAAGATGGTTCTTGCTGGGAAGTCAACTATGCTTATTTTGCCGACTGGTGCAGGGAAATCGCTGTGCTATCAGTTGCCTGCTGTGATTTTGCCTGGGGTTACACTGGTTGTTAGTCCTTTGGTAGCTTTGATGATTGATCAGCTAAGGCAATTGCCTCCTGTCATTAGGGGTGCTCTACTATGCAGCACTCAGACACCTGAAGAAGCCTCGGAAACTCTCAACCAGCTTCGACAAGGCACACTAAAGGTGCTTTTTGTTTCACCAGAGCGGTTCCTGAACGAAGAGTTTCTGTCTACTATTTCTGCTATGTCAGATGTCTCACTTGTTGTTATTGATGAAGCGCATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCTCTGCTTCATAAAAGGCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCGACAACAACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAGAAGGCACATTTAAGGGACAATTTGCGTTTATCAGTGTCTTTGTCTGAAACTGATCTAATTAGCAGATACTTGAATGATAACAATATATTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTACGTGCAGGAGTTGTTTAGTTCCAACAAAATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTTCAGGAGATAGGCCGTGCTGGGAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGACGATGAGACATACTTCAAACTTCGTAGTCTAATGCACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGCATGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCTGTTCATTGATCAAAGAATCTGCTTCACGCAGGTTTGACATGAAAGAAGAGGTCCTCTACTCAATACTATAA 1671 0.4249 MFPAQSLILEDLRYYWNPNPNELEVEKVVKEIFKGMNFYIPLKIVLAMVTTCSCSKAESGDAGNSGKSRKKHPNLIGVSLPMPTVKLRKCGGGGEGNFVKLNMSGKRKKFLNKGWKKKGKFGRFKRYKRSKGELRHEGEDQVQLFEEDGLVVGSAEQKKKQKGCCKTREIDCEVMEEAVSAARVEHSDESLVKLLKLIYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPPVIRGALLCSTQTPEEASETLNQLRQGTLKVLFVSPERFLNEEFLSTISAMSDVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKRLNVGSVLAMTATATTTTLDAIMSALDIPCTNLIQKAHLRDNLRLSVSLSETDLISRYLNDNNILAKSYHSGITAKERSYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMHSEGVDEYAVNKFLHEVFPADKSSCGKICSLIKESASRRFDMKEEVLYSIL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00033 556 Gene3D - 397 550 IPR027417 -
Sebi297g00033 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 382 IPR014001 -
Sebi297g00033 556 Pfam Helicase conserved C-terminal domain 404 483 IPR001650 -
Sebi297g00033 556 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 319 328 IPR002464 -
Sebi297g00033 556 Gene3D - 173 381 IPR027417 -
Sebi297g00033 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 498 IPR027417 -
Sebi297g00033 556 PANTHER DNA HELICASE RECQ FAMILY MEMBER 180 530 - -
Sebi297g00033 556 Pfam DEAD/DEAH box helicase 206 368 IPR011545 GO:0003676|GO:0005524
Sebi297g00033 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 382 530 IPR001650 -
Sebi297g00033 556 FunFam ATP-dependent DNA helicase Q4 172 382 - -
Sebi297g00033 556 CDD DEXHc_RecQ4-like 192 385 - -
Sebi297g00033 556 SMART helicmild6 403 484 IPR001650 -
Sebi297g00033 556 SMART ultradead3 200 398 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00033 Sebi-Chr297 538090 546982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00033 401 516 Eukaryotic Initiation Factors Gene Family AT3G19760 31.356 2.80e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00033 K10730 - gmx:100811214 688.337