Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi297g00023 ATGGATGTTGCGGAGGTTGAAGAAAATCTATTCGCTATTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGACCTAGGAGTAAAACTGGAATTCAGGCATTGTGTTCATTGCATGTAGCCTTAGAAAAAGCCAAGAGTGTTCTTCAACACTGCTCAGAGTGTAGTAAACTTTACTTGGCTGTTACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAAGAGATTGTGAATGAATTTGAGAGTGTGGAATTTGCTCTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCTAGTGACAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTGTTACATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTATAGGATCTATTGAGGATGGTATTCCTGGTGGTCAATGTCAAGCTTTTGACAGACAACTATCAAAACTTAGCTCCTTTAATTTCAAGCAAAATAATAATAGCGAATCGGGGCAGATGCCTGTTCCACCTGAAGAGTTAAGATGTCCAATATCTCTGCAGCTCATGTATGATCCGGTTATCATTGCTTCTGGCCAAACGTATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAAACTTGATCATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTGTTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAATCTACAAATTCGAGATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTATAGAGGAGAGTGGTATCTCAGAGGAATCTGGGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGACACTAAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGGACAATTGGGAGAGGAAATGTGAAGTGGTAGAACAGTTAAGGCTGTTTCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACAGTTTTTACAATCAGCTGTGCATGAAGGAGATTTGATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAACAACAGGAATAAGGAAATCATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAACACTAGTTCCTATGGTTGTGCAAGCGCTCTATATCTGAATCTCTCTTGCCTAGAAGAAGCCAAGCCTATGATTGGCATGAGTAATGCTGTACAGTTCCTCGTCCAGCTCCTTCAATCTGACTCTGATGGTCAATGCATGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATCCCATACCTCCTTTCATCTGGCATCATTAATGGTCTACAATCCCTTCTCGTAGGCCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGGACTCATTGGTGCATTGGCTTCGATATTGGACACCGGTGAGCTCCTAGTGCAGGAACAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGATATGTAGCGAGATGGTCCTGCAAGAAGGAGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACTCCAAGAGGGAGGGAAAAAGCACAGAAACTTTTGATGCTGTTCCGAGAGCAGCGACAACGAGACCCTTCACCAGTTAAGACACATCAGTGTCCACCTGAAACTAGTGATTTGTCTGTGCCGCCTGGTGAAATGAAACCTCTATGTAAATCCATGTCTAGAAGAAAGACTGGGAAAGCTTTTGGCTTTTTCTGGAAAAGCAAGAGCTATTCTATACACCAGTGTTAA 2298 0.4191 MDVAEVEENLFAISDAKLHGQMCKALSIIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKSVLQHCSECSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFESVEFALDPSEKQVGDDLIALLQQGRKFNDSSDSNELESFHQAATRLGITSSRAALAERRALKKLIDRARAEEDKRKESIVTYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVIGSIEDGIPGGQCQAFDRQLSKLSSFNFKQNNNSESGQMPVPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLDHLCLTPNYCVKGLVASWCEQNGVPVPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPIEESGISEESGENGTESVSAQEEDTKQYFSFLKVLTEGDNWERKCEVVEQLRLFLRDDEEARIFMGANGFVEALLQFLQSAVHEGDLMAQESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISNTSSYGCASALYLNLSCLEEAKPMIGMSNAVQFLVQLLQSDSDGQCMQDSLHALYNLSTVPSNIPYLLSSGIINGLQSLLVGQGDCMWTEKCIAVLINLATSQVGREEMVSTPGLIGALASILDTGELLVQEQAVSCLLILCNRSEICSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDPSPVKTHQCPPETSDLSVPPGEMKPLCKSMSRRKTGKAFGFFWKSKSYSIHQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi297g00023 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Sebi297g00023 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Sebi297g00023 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Sebi297g00023 765 SUPERFAMILY ARM repeat 428 709 IPR016024 -
Sebi297g00023 765 SUPERFAMILY RING/U-box 270 356 - -
Sebi297g00023 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Sebi297g00023 765 Coils Coil 175 195 - -
Sebi297g00023 765 PANTHER U BOX DOMAIN-CONTAINING 21 709 - -
Sebi297g00023 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Sebi297g00023 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 594 IPR000225 GO:0005515
Sebi297g00023 765 MobiDBLite consensus disorder prediction 709 734 - -
Sebi297g00023 765 Gene3D - 400 715 IPR011989 -
Sebi297g00023 765 SMART arm_5 455 499 IPR000225 GO:0005515
Sebi297g00023 765 SMART arm_5 540 581 IPR000225 GO:0005515
Sebi297g00023 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Sebi297g00023 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi297g00023 Sebi-Chr297 374150 378096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi297g00023 1 764 U-box Gene Family AT1G24330 67.266 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi297g00023 - - gmx:100794099 1332.39