Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00101 ATGGAGGAAGCTCAGGGTAGTTCCAATTCCCTGCCTCCTTTCCTCGCCAAGACTTATGAGATGGTGGATGATCCTTCCACTAATAGCATTGTTTCATGGAGTACCTCCAACAAGAGTTTCATTGTTTGGAATCCACCTGAATTTGCAAGGGATTTGTTGCCTAAATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGACAGCTCAACACTTATGGCTTTAGAAAGATTGACCCTGAACAATGGGAATTTGCAAATGAGGATTTTGTTAGAGGTCAACCACATCTTTTGAAGAATATTCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGGGGCTGGTCCACTACCAGAATCTGAACGGCAGAGTTTGAAAGGTGAGATAGAGAAGCTTAAACATGATAAAGAACAACTTCTTCTGGAGTTACAGAAACATGAACAGGAGTGGAATATGTATGAGATACAATTACATTGCTCAAAGGATCGATTGGAAAAGTTGGAAATGAAGCAACAAAGTATGCTCTCTTCTGTTTCTCAAGCGCTGCAGAAACCTGGGATTGCCTTAAATCTCTGGCCACTAACAGAAAACATGGATAGGAAACGAAGGTTGCCGAGAAGTGGTCATTTAAGTGATGAAGCTAGTATTGAAGATCCTATGGAAACTTCTCAAGTGTTACCTGGAGAAAATGCTGAGAGTACCTCTATTTTCACATCAAACATGGAGCGATTGGATCAGCTTGAGTCATCCATGACGTTTTGGGAGAATATTATTCATGATGTTGGTGACATCTCTCTTCAAAGTCATTCAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGATGTCGAAATTCAGCCTAAGTCACCTGGAATCGACATGAACTCTGAACCAGCTGTAGCTGCTATTCCTGATCCTGTTGCATCAAAAGAACAACCTGTAGGAACTGCCCCTGTGACTACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAAAATCCTGGTTCCCATGAAACACAGGAAGCACATTCAGAAAGAAAGGATTCTAATGGCAGAAGTAATGAAGGAAAACCTGGTGACCATGGCAGATTTTGGTGGAATATCAGGAATGTAAATAATCTTCCAGAACAGATGGGGCATTCTTGA 1191 0.4072 MEEAQGSSNSLPPFLAKTYEMVDDPSTNSIVSWSTSNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNLQGAGPLPESERQSLKGEIEKLKHDKEQLLLELQKHEQEWNMYEIQLHCSKDRLEKLEMKQQSMLSSVSQALQKPGIALNLWPLTENMDRKRRLPRSGHLSDEASIEDPMETSQVLPGENAESTSIFTSNMERLDQLESSMTFWENIIHDVGDISLQSHSNLDFDESTSCADSPAISCVQLDVEIQPKSPGIDMNSEPAVAAIPDPVASKEQPVGTAPVTTGVNDVFWEQFLTENPGSHETQEAHSERKDSNGRSNEGKPGDHGRFWWNIRNVNNLPEQMGHS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00101 396 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi295g00101 396 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi295g00101 396 MobiDBLite consensus disorder prediction 107 127 - -
Sebi295g00101 396 FunFam Heat shock transcription factor 1 7 104 - -
Sebi295g00101 396 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi295g00101 396 MobiDBLite consensus disorder prediction 206 233 - -
Sebi295g00101 396 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Sebi295g00101 396 Gene3D - 6 104 IPR036388 -
Sebi295g00101 396 MobiDBLite consensus disorder prediction 353 374 - -
Sebi295g00101 396 MobiDBLite consensus disorder prediction 347 379 - -
Sebi295g00101 396 Coils Coil 125 159 - -
Sebi295g00101 396 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi295g00101 396 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi295g00101 396 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi295g00101 396 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 278 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00101 Sebi-Chr295 1162684 1164001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00101 7 395 HSF AT4G18880 54.863 9.56e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi295g00101 HSF_DNA-bind 2.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00101 K09419 - gmx:100798004 624.009