Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00095 ATGACTAGGGCTATCCGCAATAGGGTACTTAAGGATGCCAATGGTGATATCAGTGATCATCTACGCAACCACATCCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCTATACTGGCTGATAGGTCAATCATGAGGGACCTTGTTGTGCTGCAGAGATCACGCTCTCTCAGGGACCCTTCTGCAAGTCCTCCATCATGGAAGTCACCTTCTGTAGTTGACATACTTTACAAAAAAGCTGAAAATGATGCCATGGCTATGGGGGGAAGAAGGTCTATAGGTGTTGAGCGCAGGAAGGAAGGGAGGAGATTGTCTGGAACTTCACCACCCTTGGTGAATATAGGTGCATCAAGAGTTGCTCCAGGTGAGGTTAGTAGGGGTCATGATGCGGTACCGGCAACTAGTGAACGGAGTAGCAGGAGTGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGCATCAAGAGATATTGGTGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAGCTCAGGGTTCAGCCCACCAGAAATATCACTCTGAGGAGGTTGATGAATATGCAGATGACAATGTTACTAGGGCTCCAAAAAATGGGTGTGGTATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTTTCTTGTGGTTTATCTGACTCAAGGCTGAAGAAAGGGGCATTAACTACCAATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCAATCAAGCTCATATACTAAATCTGATGCAGAGGCACTGCCTTTACTAGTTGATGCGTCTGGATCTCATGGAAGCACTGAAAATGCTTGCTGGGGCCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATCATTTATTCAAGCATGATATTGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTGGCCAACATAAGTTGAGAGGGAATCGTCATGGTAGACACCAAAGCTTAACACAAAAATATATGCCACGGACCTTCAGAGACATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATGAAAAGGAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAATCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGATAATATGATTGTTTCCCAGCTTCCATCACAATATAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATACACACTGCAGTTGATCGCAACCAAAGAAAGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGATCAGATGGATCGTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTCGGGCAGAGAATATCTGTTCCTCTAGTTCAGGAACTGGTAGGGCTCATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTAATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCGCAAAAGAAAGGCGAAGAAGGAGGTTCTTCCGGAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCACTAAAAAATGCAGATGTGAGAGAAGCTGCTAGAATCACTGGTAATCCTGTTGAAATTCCTAACAAAGGCAGACGATTGTCAATGGATGCGAGAATAGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTATGACAAAGGGTCATAGTTCAGAGAAAAGAAGATTTAGTGTGTCTGGTTTTCCTCCTCAACATACTTATTCGCATGCCACCAATAATAAGATTAGGATAAATGAGAGGCAAATCTTGGGTAAAAACCGTAAAGAAGCTGAAGAGATATGGTTAGAGGTGCTTGAGAGGATTCAAGTTACTGGTCTGAAAGAGTTTTTGTATAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACTGGCTAAATCTACTGCTGAGAAGTTCACTGGTCACATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTATAACCATAGAAATTAGATGTGAGTCAAATAAAGATGCAGGCTCAGCTGCTCAACTGCCTCTTATATTGCCTGCTTTCAATGATGGTTCATCTCAAATTAGAGACATAAATGGTGTTGGCACTGAAGCTCATCCTTCACTAATTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCATCTTCTCATGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATATAGCATCTTATAAAAGTCTAGAAGGTACAAGTCTAGGACAAGCATCAGCTTCCCAAAAAGGGCCAATTGTTAAGTCGCATTTAGACAGAAGAAAGCTTAGGGAGCAAGGTCAAAGTCGAAGTCTTGTAAGAAGTAAGGAGATTGGAACCAAGATCAAGGAGCTTACTATGCTGGAAAGCAACAAGAGTAACCCGTCGGAAGGTCCTAGACAGTGGGAAAAGATAACAAATATTACTAATTTAGAAGAAGTGAAATGA 3081 0.4164 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWKSPSVVDILYKKAENDAMAMGGRRSIGVERRKEGRRLSGTSPPLVNIGASRVAPGEVSRGHDAVPATSERSSRSGMGDGRRVGREESASRDIGAENELSVASNSLAQGSAHQKYHSEEVDEYADDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRLKKGALTTNGRNISEMPVASEQSSSYTKSDAEALPLLVDASGSHGSTENACWGHDYSGELGLFGDHLFKHDIDSDLASEARSGGQHKLRGNRHGRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREVGPISNFDFESIMDLLDNMIVSQLPSQYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQLIATKESLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFAKERRRRRFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLALKNADVREAARITGNPVEIPNKGRRLSMDARIENFHAGSSADGMTKGHSSEKRRFSVSGFPPQHTYSHATNNKIRINERQILGKNRKEAEEIWLEVLERIQVTGLKEFLYKEGKLISVSFGAAPTVQLMFSSQLAKSTAEKFTGHILQAFESVLGSSITIEIRCESNKDAGSAAQLPLILPAFNDGSSQIRDINGVGTEAHPSLIDSVEKRRGEIVEEASSHVEHKNNEQQVDAHIASYKSLEGTSLGQASASQKGPIVKSHLDRRKLREQGQSRSLVRSKEIGTKIKELTMLESNKSNPSEGPRQWEKITNITNLEEVK 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00095 1026 Pfam DNA polymerase III subunits gamma and tau domain III 566 684 IPR022754 GO:0003887
Sebi295g00095 1026 FunFam DNA polymerase III subunit gamma/tau 332 509 - -
Sebi295g00095 1026 SUPERFAMILY post-AAA+ oligomerization domain-like 581 684 IPR008921 GO:0003677|GO:0006260
Sebi295g00095 1026 Gene3D - 328 507 IPR027417 -
Sebi295g00095 1026 MobiDBLite consensus disorder prediction 168 183 - -
Sebi295g00095 1026 MobiDBLite consensus disorder prediction 95 189 - -
Sebi295g00095 1026 Pfam DNA polymerase III, delta subunit 353 510 - -
Sebi295g00095 1026 NCBIfam DNA polymerase III subunit gamma/tau 336 684 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sebi295g00095 1026 CDD HLD_clamp_pol_III_gamma_tau 510 573 IPR045085 -
Sebi295g00095 1026 MobiDBLite consensus disorder prediction 744 768 - -
Sebi295g00095 1026 FunFam DNA polymerase III subunit gamma/tau 511 573 - -
Sebi295g00095 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 557 IPR027417 -
Sebi295g00095 1026 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 339 769 - -
Sebi295g00095 1026 Coils Coil 646 673 - -
Sebi295g00095 1026 Gene3D - 511 573 - -
Sebi295g00095 1026 MobiDBLite consensus disorder prediction 1001 1026 - -
Sebi295g00095 1026 MobiDBLite consensus disorder prediction 146 164 - -
Sebi295g00095 1026 SMART AAA_5 369 510 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00095 Sebi-Chr295 1114002 1122495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00095 336 634 Core DNA Replication Machinery Family AT1G21690 23.588 1.31e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00095 - - gmx:100809005 1436.4