Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi295g00081 ATGGATCAAGCAGGAATCAAAGGCAGAGGTGAGGTATTGCATCCTGTTCTTGAAGGGGTAGATGAGAATTTAAGCCCTTTGGTTGAAAGGGTTGCAATTGATGCAGTAGATAGGAGTAGCTTGGTTGACAGGCCTAGTATGATTGGGGAAGTTGGAACCTCAGGAGAGGTGGGTAAGGATTCGGGATCCAATAAGGAGCTAAAGGAGGAGCCTGAGGATGTTAAGGGTCATGACAAGTGTGATCAAGAAAATATATGTGATAAATTGCCTGGGGTTGATCAAGGAACTAGTTATAATTCAAACAATTTGGTTAATCAGGAAGTGCTTGAGACTGTGGTGGTAATAGAGCCTGTTCAGACTGAATACATCAATGGAGATAACAGGAAATTGGAAGCAAAAGCTAATGAATCAGAGTTGAGCTTGGCATCCATGAAAACAACAAAAGGGGTGTCTGAAACAGATAAAAATTCATGTGTGATTGATATAAAGTGCAGCAAAGGGTTTTATGAGAATTCAGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATCAGATGAAACAGCAGTGGATACTGCTAATAGTGCTACAAGCACAGATTTGATTCAGCTTGGTTGCGCGTGTAAGGATGAGCTGGGCATTGCACACCTTCATTGTGCTGAAGCATGGTTCAAGGTTAAGGGAAACAGGTTATGTGAAATATGTGGTGAGACTGCAAAGAATGTTTTGGGTGTTACCAATAATGGATTTATGGAAGAATGGTACGAGAGAAGGTTCATGGACAATGATAGTAACACATCCCACAGCTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCGTGCTTGGTAATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATATTCTAG 921 0.418 MDQAGIKGRGEVLHPVLEGVDENLSPLVERVAIDAVDRSSLVDRPSMIGEVGTSGEVGKDSGSNKELKEEPEDVKGHDKCDQENICDKLPGVDQGTSYNSNNLVNQEVLETVVVIEPVQTEYINGDNRKLEAKANESELSLASMKTTKGVSETDKNSCVIDIKCSKGFYENSEGERICRICHLTSGQSSDETAVDTANSATSTDLIQLGCACKDELGIAHLHCAEAWFKVKGNRLCEICGETAKNVLGVTNNGFMEEWYERRFMDNDSNTSHSFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNIF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi295g00081 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 249 IPR013083 -
Sebi295g00081 306 Coils Coil 127 147 - -
Sebi295g00081 306 SMART ringv_2 177 240 IPR011016 GO:0008270
Sebi295g00081 306 PANTHER ZINC FINGER, RING-CH-TYPE 60 306 - -
Sebi295g00081 306 SUPERFAMILY RING/U-box 172 242 - -
Sebi295g00081 306 MobiDBLite consensus disorder prediction 61 81 - -
Sebi295g00081 306 Pfam RING-variant domain 178 239 IPR011016 GO:0008270
Sebi295g00081 306 ProSiteProfiles Zinc finger RING-CH-type profile. 170 246 IPR011016 GO:0008270
Sebi295g00081 306 MobiDBLite consensus disorder prediction 46 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi295g00081 Sebi-Chr295 989423 991537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi295g00081 153 305 C3H Transcription Factor Family AT5G05830 38.788 7.76e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi295g00081 - - gmx:102668208 454.521